Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_G19
(807 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99MJ9|DDX50_MOUSE DEAD-box protein 50 (Nucleolar protei... 54 7e-07
sp|Q9BQ39|DDX50_HUMAN DEAD-box protein 50 (Nucleolar protei... 53 9e-07
sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase II (Nucleolar ... 42 0.002
sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase II (Nucleolar ... 38 0.029
sp|Q57801|Y355_METJA Hypothetical protein MJ0355 33 0.70
sp|Q8K4G5|ABLM1_MOUSE Actin-binding LIM protein 1 (Actin-bi... 33 0.70
sp|O87131|CHER1_PSEAE Chemotaxis protein methyltransferase 1 33 1.2
sp|P55249|LX12E_MOUSE Arachidonate 12-lipoxygenase, epiderm... 32 2.7
sp|Q88VS3|SYGB_LACPL Glycyl-tRNA synthetase beta chain (Gly... 32 2.7
sp|Q8G6D6|PGK_BIFLO Phosphoglycerate kinase 31 3.5
>sp|Q99MJ9|DDX50_MOUSE DEAD-box protein 50 (Nucleolar protein Gu2) (Gu-beta)
Length = 734
Score = 53.5 bits (127), Expect = 7e-07
Identities = 38/144 (26%), Positives = 67/144 (46%)
Frame = +2
Query: 44 DKYKKMAKLLIDEFGEVDSVSRLICLLSSEKETNGVSSKKSKPVHSGPGSKLTGRIGYTA 223
D ++ A+ LI+E G VD+++ + +S G SS + P S +T G+
Sbjct: 540 DFFRPSAQRLIEEKGAVDALAAALAHIS------GASSFE-------PRSLITSDKGFVT 586
Query: 224 YHFIADKEISSKGYLFKSLKRLIEEDAVEKIERVQQTKDLKGFVFDLPTDVDDTFQSNWR 403
+ +EI +K L R + +AV + R+ K G FD+PT + Q+ W
Sbjct: 587 MTLESPEEIQDVSCAWKELNRKLSSNAVSHVTRMCLLKGNMGVCFDVPTSESERLQAEWH 646
Query: 404 DGKYDTLQLLEGEIPELDESTGGS 475
D D + + ++PE++E G+
Sbjct: 647 DS--DWILSVPAKLPEIEEYYDGN 668
>sp|Q9BQ39|DDX50_HUMAN DEAD-box protein 50 (Nucleolar protein Gu2) (Gu-beta)
Length = 737
Score = 53.1 bits (126), Expect = 9e-07
Identities = 39/144 (27%), Positives = 68/144 (47%)
Frame = +2
Query: 44 DKYKKMAKLLIDEFGEVDSVSRLICLLSSEKETNGVSSKKSKPVHSGPGSKLTGRIGYTA 223
D ++ A+ LI+E G VD+++ + +S G SS + P S +T G+
Sbjct: 543 DFFRPSAQRLIEEKGAVDALAAALAHIS------GASSFE-------PRSLITSDKGFVT 589
Query: 224 YHFIADKEISSKGYLFKSLKRLIEEDAVEKIERVQQTKDLKGFVFDLPTDVDDTFQSNWR 403
+ +EI +K L R + +AV +I R+ K G FD+PT + Q+ W
Sbjct: 590 MTLESLEEIQDVSCAWKELNRKLSSNAVSQITRMCLLKGNMGVCFDVPTTESERLQAEWH 649
Query: 404 DGKYDTLQLLEGEIPELDESTGGS 475
D D + + ++PE++E G+
Sbjct: 650 DS--DWILSVPAKLPEIEEYYDGN 671
>sp|Q9NR30|DDX21_HUMAN Nucleolar RNA helicase II (Nucleolar RNA helicase Gu) (RH II/Gu)
(Gu-alpha) (DEAD-box protein 21)
Length = 783
Score = 42.0 bits (97), Expect = 0.002
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 3/144 (2%)
Frame = +2
Query: 50 YKKMAKLLIDEFGEVDSVSRLICLLSSEKETNGVSSKKSKPVHSGPGSKLTGRIGYTAYH 229
+K+ A+ LI+E G V++++ + +S G +S + S + +G+
Sbjct: 594 FKQSAEKLIEEKGAVEALAAALAHIS------GATSVDQR-------SLINSNVGFVTMI 640
Query: 230 FIADKEISSKGYLFKSLKRLIEEDAVEKIERVQQTKDLKGFVFDLPTDVDDTFQSNWRDG 409
E+ + Y +K LK + E+ K++ + K G FD+PT Q W D
Sbjct: 641 LQCSIEMPNISYAWKELKEQLGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDS 700
Query: 410 KYDTLQLLEGEIPELD---ESTGG 472
+ L + E PEL+ E GG
Sbjct: 701 RRWQLSVAT-EQPELEGpreGYGG 723
>sp|Q9JIK5|DDX21_MOUSE Nucleolar RNA helicase II (Nucleolar RNA helicase Gu) (RH II/Gu)
(Gu-alpha) (DEAD-box protein 21)
Length = 851
Score = 38.1 bits (87), Expect = 0.029
Identities = 33/141 (23%), Positives = 60/141 (42%)
Frame = +2
Query: 50 YKKMAKLLIDEFGEVDSVSRLICLLSSEKETNGVSSKKSKPVHSGPGSKLTGRIGYTAYH 229
+K+ A+ LI+E G V++++ + +S G +S + S + + G+
Sbjct: 666 FKQSAEKLIEEKGAVEALAAALAHIS------GATSVDQR-------SLINSQAGFVTMI 712
Query: 230 FIADKEISSKGYLFKSLKRLIEEDAVEKIERVQQTKDLKGFVFDLPTDVDDTFQSNWRDG 409
E+ + Y +K LK + E K++ + K G FD+ T+ Q W D
Sbjct: 713 LRCSIEMPNISYAWKELKEQLGESIDAKVKGMVFLKGKLGVCFDVRTEAVTEIQEKWHDS 772
Query: 410 KYDTLQLLEGEIPELDESTGG 472
+ L + E PEL+ G
Sbjct: 773 RRWQLTVAT-EQPELEGPQDG 792
>sp|Q57801|Y355_METJA Hypothetical protein MJ0355
Length = 109
Score = 33.5 bits (75), Expect = 0.70
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = +2
Query: 194 KLTGRIGYTAYHFIADKEISSKGYLFKSLKRLIEEDAVEKIERVQQ----TKDLKGFVFD 361
+ GR+ + F++DKEI + S K ++E DA + E +++ +K + G V +
Sbjct: 39 RFDGRMWIMGFEFLSDKEIKYSCFENYSFKCILETDAKKVREFLEEIYSKSKIVNGRVKE 98
Query: 362 LPTDV 376
+PTDV
Sbjct: 99 IPTDV 103
>sp|Q8K4G5|ABLM1_MOUSE Actin-binding LIM protein 1 (Actin-binding LIM protein family
member 1) (abLIM-1)
Length = 861
Score = 33.5 bits (75), Expect = 0.70
Identities = 22/69 (31%), Positives = 34/69 (49%)
Frame = +2
Query: 116 CLLSSEKETNGVSSKKSKPVHSGPGSKLTGRIGYTAYHFIADKEISSKGYLFKSLKRLIE 295
CL +S K + S+ ++S PGS + G G+T Y + D EI +K L + +
Sbjct: 381 CLTNSNKNPRQPTRTSSESIYSRPGSSIPGSPGHTIYAKV-DNEILD----YKDLAAIPK 435
Query: 296 EDAVEKIER 322
A+ IER
Sbjct: 436 VKAIYDIER 444
>sp|O87131|CHER1_PSEAE Chemotaxis protein methyltransferase 1
Length = 274
Score = 32.7 bits (73), Expect = 1.2
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +2
Query: 251 SSKGYLFKS-LKRLIEEDAVEKI-ERVQQTKDLKGFVFDLPTDVDDTFQSNWRDGKYDTL 424
S+K YL S L +L+E+ ++ + E VQ+ + +G + ++ D T ++ W Y
Sbjct: 25 SNKQYLVSSRLNKLMEQQGIKSLGELVQRIQTQRGGLREMVVDAMTTNETLWFRDTYPFE 84
Query: 425 QLLEGEIPELDESTGG 472
L + +PEL ++ GG
Sbjct: 85 VLKQRVLPELIKANGG 100
>sp|P55249|LX12E_MOUSE Arachidonate 12-lipoxygenase, epidermal-type (12-LOX)
Length = 662
Score = 31.6 bits (70), Expect = 2.7
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +2
Query: 230 FIADKEISSKGYLFKSLKRLIEEDAVEKIERVQQTKDLKGFVFDLPTDVDDTFQSNWRDG 409
F+ DK++ L K LK + ++ + RVQ+ +D + T + + + +W++
Sbjct: 166 FMKDKDLDFSLSLVKELKNFAIKGTLDFVSRVQKLEDYQKVFPHTKTALPERVRGSWKED 225
Query: 410 KYDTLQLLEGEIPEL 454
Q L G P L
Sbjct: 226 ALFGYQFLNGANPML 240
>sp|Q88VS3|SYGB_LACPL Glycyl-tRNA synthetase beta chain (Glycine--tRNA ligase beta chain)
(GlyRS)
Length = 694
Score = 31.6 bits (70), Expect = 2.7
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Frame = +2
Query: 197 LTGRIGYTAYHFIADKEISSKGYLFKSLKRLIEEDAV----EKIERVQQTKDLKGFVFDL 364
LT R+ A+ + D++ S + Y+ + LK++ D + EK++RV D F L
Sbjct: 320 LTARLEDAAFFYHEDQQHSIQEYV-ERLKKVSFHDKIGTMYEKMQRVMIISDFLADRFGL 378
Query: 365 PTDVDDTFQSNWRDGKYDTLQLLEGEIPELDESTGGSY 478
+ + K+D + + GE PEL G Y
Sbjct: 379 TETEKNQLHRAAQIYKFDLVTGMVGEFPELQGVMGDKY 416
>sp|Q8G6D6|PGK_BIFLO Phosphoglycerate kinase
Length = 401
Score = 31.2 bits (69), Expect = 3.5
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Frame = +2
Query: 131 EKETNGVSSKKSKPVHSGP----GSKLTGRIGYTAYHFI-ADKEISSKGYLFKSLKR--- 286
EKE +S P GSK++ ++G A++ + G +F LK
Sbjct: 175 EKEVKALSKATENPERPFTVVLGGSKVSDKLGVIENLLDKANRLVIGGGMVFTFLKAKGY 234
Query: 287 -----LIEEDAVEKIERVQQTKDLKGFVFDLPTDV 376
L+EED +EK++ +T + G LPTDV
Sbjct: 235 EVGTSLLEEDQLEKVKGYIETAEKNGVELVLPTDV 269
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,883,089
Number of Sequences: 369166
Number of extensions: 1458677
Number of successful extensions: 3835
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3835
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7666799535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)