DrC_00192
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00192 (913 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P18890|K1688_RAT Protein KIAA1688 homolog (Preoptic regu... 39 0.015 sp|P59281|K1688_MOUSE Protein KIAA1688 homolog 39 0.015 sp|Q9C0H5|KG88_HUMAN Protein KIAA1688 39 0.020 sp|Q8R5G7|CEND3_MOUSE Centaurin-delta 3 (Cnt-d3) (Arf-GAP, ... 35 0.22 sp|Q35905|RMAR_SACDO Mitochondrial ribosomal protein VAR1 34 0.50 sp|Q8WWN8|CEND3_HUMAN Centaurin-delta 3 (Cnt-d3) (Arf-GAP, ... 33 0.85 sp|P55194|3BP1_MOUSE SH3-domain-binding protein 1 (3BP-1) 33 1.1 sp|P02381|RMAR_YEAST Mitochondrial ribosomal protein VAR1 32 2.5 sp|Q9Y3L3|3BP1_HUMAN SH3-domain-binding protein 1 (3BP-1) 32 3.2 sp|P46213|SYI_THEMA Isoleucyl-tRNA synthetase (Isoleucine--... 32 3.2
>sp|P18890|K1688_RAT Protein KIAA1688 homolog (Preoptic regulatory factor 2) (PORF-2) Length = 101 Score = 39.3 bits (90), Expect = 0.015 Identities = 19/46 (41%), Positives = 28/46 (60%) Frame = +2 Query: 26 VYQCLTRLHQATLMYLVRFLQLLSIDDNVRLNRMGPWNLAVALAPN 163 V L R+++ L YL+RFLQ+ NV + +M NLA+ +APN Sbjct: 17 VVHALPRINRMVLCYLIRFLQVFVQPANVAITKMDVSNLAMVMAPN 62
>sp|P59281|K1688_MOUSE Protein KIAA1688 homolog Length = 1107 Score = 39.3 bits (90), Expect = 0.015 Identities = 19/46 (41%), Positives = 28/46 (60%) Frame = +2 Query: 26 VYQCLTRLHQATLMYLVRFLQLLSIDDNVRLNRMGPWNLAVALAPN 163 V L R+++ L YL+RFLQ+ NV + +M NLA+ +APN Sbjct: 1023 VVHALPRINRMVLCYLIRFLQVFVQPANVAITKMDVSNLAMVMAPN 1068
>sp|Q9C0H5|KG88_HUMAN Protein KIAA1688 Length = 1083 Score = 38.9 bits (89), Expect = 0.020 Identities = 19/46 (41%), Positives = 28/46 (60%) Frame = +2 Query: 26 VYQCLTRLHQATLMYLVRFLQLLSIDDNVRLNRMGPWNLAVALAPN 163 V L R+++ L YL+RFLQ+ NV + +M NLA+ +APN Sbjct: 999 VVHALPRINRMVLCYLIRFLQVFVQPANVAVTKMDVSNLAMVMAPN 1044
>sp|Q8R5G7|CEND3_MOUSE Centaurin-delta 3 (Cnt-d3) (Arf-GAP, Rho-GAP, ankyrin repeat and pleckstrin homology domain-containing protein 3) (Dual-specificity Rho-and Arf-GTPase-activating protein 1) Length = 1538 Score = 35.4 bits (80), Expect = 0.22 Identities = 21/52 (40%), Positives = 29/52 (55%) Frame = +2 Query: 23 EVYQCLTRLHQATLMYLVRFLQLLSIDDNVRLNRMGPWNLAVALAPNVFQLD 178 EV CL R+++ TL L+ L + LN+M NLA+ AP+VFQ D Sbjct: 1014 EVISCLPRVNRRTLATLIG--HLYRVQKCASLNQMCTRNLALLFAPSVFQTD 1063
>sp|Q35905|RMAR_SACDO Mitochondrial ribosomal protein VAR1 Length = 373 Score = 34.3 bits (77), Expect = 0.50 Identities = 22/79 (27%), Positives = 34/79 (43%) Frame = -3 Query: 878 IMPSLID*R**ININVLNNETKADNNQYSKTIKTFIHRNINFYNNETKLSNYNSCITRLK 699 IMP L D I++N +NN +NN+Y+ I + N N NN +NY I + Sbjct: 224 IMPKLNDHN--ISMNYINNINNINNNKYNNMINLLNNNNNNNNNNNNNNNNYIDNINNIY 281 Query: 698 SYTVFSRIGLKFSFENILI 642 + I + L+ Sbjct: 282 NNMTIDNIPMDILMYKYLV 300
>sp|Q8WWN8|CEND3_HUMAN Centaurin-delta 3 (Cnt-d3) (Arf-GAP, Rho-GAP, ankyrin repeat and pleckstrin homology domain-containing protein 3) Length = 1544 Score = 33.5 bits (75), Expect = 0.85 Identities = 20/52 (38%), Positives = 29/52 (55%) Frame = +2 Query: 23 EVYQCLTRLHQATLMYLVRFLQLLSIDDNVRLNRMGPWNLAVALAPNVFQLD 178 +V CL R+++ TL L+ L + LN+M NLA+ AP+VFQ D Sbjct: 1018 DVIGCLPRVNRRTLATLIG--HLYRVQKCAALNQMCTRNLALLFAPSVFQTD 1067
>sp|P55194|3BP1_MOUSE SH3-domain-binding protein 1 (3BP-1) Length = 601 Score = 33.1 bits (74), Expect = 1.1 Identities = 16/35 (45%), Positives = 25/35 (71%) Frame = +2 Query: 62 LMYLVRFLQLLSIDDNVRLNRMGPWNLAVALAPNV 166 L YL++FL LL+ + +V N+M P N+A+ L PN+ Sbjct: 320 LRYLMKFLALLAEEQDV--NKMTPSNIAIVLGPNL 352
>sp|P02381|RMAR_YEAST Mitochondrial ribosomal protein VAR1 Length = 404 Score = 32.0 bits (71), Expect = 2.5 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = -3 Query: 878 IMPSLID*R**ININVLNNETKADNNQYSKTIKTFIHRNINFYNNETKLSNYNS 717 IMP L D I++N +NN +NN+Y+ I + N N NN ++N N+ Sbjct: 247 IMPKLNDHN--ISMNYINNINNINNNKYNNMINLLNNNNNN--NNNNNINNNNN 296
>sp|Q9Y3L3|3BP1_HUMAN SH3-domain-binding protein 1 (3BP-1) Length = 701 Score = 31.6 bits (70), Expect = 3.2 Identities = 19/54 (35%), Positives = 31/54 (57%) Frame = +2 Query: 5 RARSPLEVYQCLTRLHQATLMYLVRFLQLLSIDDNVRLNRMGPWNLAVALAPNV 166 R ++ EV L + + L YL++FL L+ + V N+M P N+A+ L PN+ Sbjct: 380 RLQALQEVCSRLPPENLSNLRYLMKFLARLAEEQEV--NKMTPSNIAIVLGPNL 431
>sp|P46213|SYI_THEMA Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS) Length = 919 Score = 31.6 bits (70), Expect = 3.2 Identities = 21/74 (28%), Positives = 39/74 (52%) Frame = +1 Query: 526 NKNLIHENLYLLSIEQVIVHYCKSCRYQDIWSHHLNAIRINIFSNENFKPILENTV*LFN 705 ++ L+ + LLSI + ++ + R QD+ H L+A + + N+ K +LE + Sbjct: 794 DRKLMEDFEKLLSIREDVLKALEEKRQQDVIGHSLDAEVVLVPKNDTIKALLEK----YR 849 Query: 706 RVMHEL*LDSFVSL 747 ++ EL + S VSL Sbjct: 850 DILEELFIVSKVSL 863
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,892,078
Number of Sequences: 369166
Number of extensions: 1734184
Number of successful extensions: 4161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4136
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9270587090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
