Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_L23
(913 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18890|K1688_RAT Protein KIAA1688 homolog (Preoptic regu... 39 0.015
sp|P59281|K1688_MOUSE Protein KIAA1688 homolog 39 0.015
sp|Q9C0H5|KG88_HUMAN Protein KIAA1688 39 0.020
sp|Q8R5G7|CEND3_MOUSE Centaurin-delta 3 (Cnt-d3) (Arf-GAP, ... 35 0.22
sp|Q35905|RMAR_SACDO Mitochondrial ribosomal protein VAR1 34 0.50
sp|Q8WWN8|CEND3_HUMAN Centaurin-delta 3 (Cnt-d3) (Arf-GAP, ... 33 0.85
sp|P55194|3BP1_MOUSE SH3-domain-binding protein 1 (3BP-1) 33 1.1
sp|P02381|RMAR_YEAST Mitochondrial ribosomal protein VAR1 32 2.5
sp|Q9Y3L3|3BP1_HUMAN SH3-domain-binding protein 1 (3BP-1) 32 3.2
sp|P46213|SYI_THEMA Isoleucyl-tRNA synthetase (Isoleucine--... 32 3.2
>sp|P18890|K1688_RAT Protein KIAA1688 homolog (Preoptic regulatory factor 2) (PORF-2)
Length = 101
Score = 39.3 bits (90), Expect = 0.015
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +2
Query: 26 VYQCLTRLHQATLMYLVRFLQLLSIDDNVRLNRMGPWNLAVALAPN 163
V L R+++ L YL+RFLQ+ NV + +M NLA+ +APN
Sbjct: 17 VVHALPRINRMVLCYLIRFLQVFVQPANVAITKMDVSNLAMVMAPN 62
>sp|P59281|K1688_MOUSE Protein KIAA1688 homolog
Length = 1107
Score = 39.3 bits (90), Expect = 0.015
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +2
Query: 26 VYQCLTRLHQATLMYLVRFLQLLSIDDNVRLNRMGPWNLAVALAPN 163
V L R+++ L YL+RFLQ+ NV + +M NLA+ +APN
Sbjct: 1023 VVHALPRINRMVLCYLIRFLQVFVQPANVAITKMDVSNLAMVMAPN 1068
>sp|Q9C0H5|KG88_HUMAN Protein KIAA1688
Length = 1083
Score = 38.9 bits (89), Expect = 0.020
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +2
Query: 26 VYQCLTRLHQATLMYLVRFLQLLSIDDNVRLNRMGPWNLAVALAPN 163
V L R+++ L YL+RFLQ+ NV + +M NLA+ +APN
Sbjct: 999 VVHALPRINRMVLCYLIRFLQVFVQPANVAVTKMDVSNLAMVMAPN 1044
>sp|Q8R5G7|CEND3_MOUSE Centaurin-delta 3 (Cnt-d3) (Arf-GAP, Rho-GAP, ankyrin repeat and
pleckstrin homology domain-containing protein 3)
(Dual-specificity Rho-and Arf-GTPase-activating protein
1)
Length = 1538
Score = 35.4 bits (80), Expect = 0.22
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +2
Query: 23 EVYQCLTRLHQATLMYLVRFLQLLSIDDNVRLNRMGPWNLAVALAPNVFQLD 178
EV CL R+++ TL L+ L + LN+M NLA+ AP+VFQ D
Sbjct: 1014 EVISCLPRVNRRTLATLIG--HLYRVQKCASLNQMCTRNLALLFAPSVFQTD 1063
>sp|Q35905|RMAR_SACDO Mitochondrial ribosomal protein VAR1
Length = 373
Score = 34.3 bits (77), Expect = 0.50
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = -3
Query: 878 IMPSLID*R**ININVLNNETKADNNQYSKTIKTFIHRNINFYNNETKLSNYNSCITRLK 699
IMP L D I++N +NN +NN+Y+ I + N N NN +NY I +
Sbjct: 224 IMPKLNDHN--ISMNYINNINNINNNKYNNMINLLNNNNNNNNNNNNNNNNYIDNINNIY 281
Query: 698 SYTVFSRIGLKFSFENILI 642
+ I + L+
Sbjct: 282 NNMTIDNIPMDILMYKYLV 300
>sp|Q8WWN8|CEND3_HUMAN Centaurin-delta 3 (Cnt-d3) (Arf-GAP, Rho-GAP, ankyrin repeat and
pleckstrin homology domain-containing protein 3)
Length = 1544
Score = 33.5 bits (75), Expect = 0.85
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +2
Query: 23 EVYQCLTRLHQATLMYLVRFLQLLSIDDNVRLNRMGPWNLAVALAPNVFQLD 178
+V CL R+++ TL L+ L + LN+M NLA+ AP+VFQ D
Sbjct: 1018 DVIGCLPRVNRRTLATLIG--HLYRVQKCAALNQMCTRNLALLFAPSVFQTD 1067
>sp|P55194|3BP1_MOUSE SH3-domain-binding protein 1 (3BP-1)
Length = 601
Score = 33.1 bits (74), Expect = 1.1
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 62 LMYLVRFLQLLSIDDNVRLNRMGPWNLAVALAPNV 166
L YL++FL LL+ + +V N+M P N+A+ L PN+
Sbjct: 320 LRYLMKFLALLAEEQDV--NKMTPSNIAIVLGPNL 352
>sp|P02381|RMAR_YEAST Mitochondrial ribosomal protein VAR1
Length = 404
Score = 32.0 bits (71), Expect = 2.5
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = -3
Query: 878 IMPSLID*R**ININVLNNETKADNNQYSKTIKTFIHRNINFYNNETKLSNYNS 717
IMP L D I++N +NN +NN+Y+ I + N N NN ++N N+
Sbjct: 247 IMPKLNDHN--ISMNYINNINNINNNKYNNMINLLNNNNNN--NNNNNINNNNN 296
>sp|Q9Y3L3|3BP1_HUMAN SH3-domain-binding protein 1 (3BP-1)
Length = 701
Score = 31.6 bits (70), Expect = 3.2
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +2
Query: 5 RARSPLEVYQCLTRLHQATLMYLVRFLQLLSIDDNVRLNRMGPWNLAVALAPNV 166
R ++ EV L + + L YL++FL L+ + V N+M P N+A+ L PN+
Sbjct: 380 RLQALQEVCSRLPPENLSNLRYLMKFLARLAEEQEV--NKMTPSNIAIVLGPNL 431
>sp|P46213|SYI_THEMA Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS)
Length = 919
Score = 31.6 bits (70), Expect = 3.2
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = +1
Query: 526 NKNLIHENLYLLSIEQVIVHYCKSCRYQDIWSHHLNAIRINIFSNENFKPILENTV*LFN 705
++ L+ + LLSI + ++ + R QD+ H L+A + + N+ K +LE +
Sbjct: 794 DRKLMEDFEKLLSIREDVLKALEEKRQQDVIGHSLDAEVVLVPKNDTIKALLEK----YR 849
Query: 706 RVMHEL*LDSFVSL 747
++ EL + S VSL
Sbjct: 850 DILEELFIVSKVSL 863
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,892,078
Number of Sequences: 369166
Number of extensions: 1734184
Number of successful extensions: 4161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4136
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9270587090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)