Planaria EST Database

DrC_00185

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00185
         (392 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03705|YMD6_YEAST  Hypothetical 20.7 kDa protein in CAT2-...    31   0.78 
sp|P57363|ISPZ_BUCAI  Probable intracellular septation protein     30   1.3  
sp|P41842|YO91_CAEEL  Hypothetical protein T20B12.1 in chrom...    29   3.0  
sp|Q9H598|VIAAT_HUMAN  Vesicular inhibitory amino acid trans...    28   6.6  
sp|O35458|VIAAT_RAT  Vesicular inhibitory amino acid transpo...    28   6.6  
sp|O35633|VIAAT_MOUSE  Vesicular inhibitory amino acid trans...    28   6.6  
sp|Q95KE2|VIAAT_MACFA  Vesicular inhibitory amino acid trans...    28   6.6  

>sp|Q03705|YMD6_YEAST Hypothetical 20.7 kDa protein in CAT2-AMD1 intergenic region
          Length = 181

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +2

Query: 44  HKMKCSTLSAEIIYCLSLSNKITNCFKQIGIQTSTKSIIAI 166
           +KM+   L++E + CLS ++ I++ F + GI+  +  +I +
Sbjct: 67  NKMRTRNLNSECVLCLSPTSNISDAFLKFGIKDDSSQLICL 107

>sp|P57363|ISPZ_BUCAI Probable intracellular septation protein
          Length = 177

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
 Frame = -3

Query: 378 IYFRKISFVTILFMI*MSILS------FEESLSVN**RFLIDSMSISFSLITSLLYTIK 220
           IY+RKI+F+  LF +  +IL+      F E++ VN   F   S++    LITS+    K
Sbjct: 114 IYWRKINFIWSLFFLFCAILNIYIAYYFSETIWVNFKVFGFTSLTFFLILITSIYINCK 172

>sp|P41842|YO91_CAEEL Hypothetical protein T20B12.1 in chromosome III
          Length = 787

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 14/59 (23%), Positives = 34/59 (57%)
 Frame = +2

Query: 35  GIIHKMKCSTLSAEIIYCLSLSNKITNCFKQIGIQTSTKSIIAILLLPKDQTKDSSITH 211
           GI++ + C++ +  I+  L + + + +C+KQ+G     +++I  L+   +Q  + S+ H
Sbjct: 387 GILNSLGCTSEALLILEKLEMWDGVIDCYKQLGQMDKAETLIRRLI---EQKPNDSMLH 442

>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter (GABA and glycine
           transporter) (Vesicular GABA transporter) (hVIAAT)
           (Solute carrier family 32 member 1)
          Length = 525

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 112 CYFITQTKAVNNFS*KCATFHFVNNTILM 26
           C F+   KAV+ FS  C   HFV N +++
Sbjct: 254 CAFLKNLKAVSKFSLLCTLAHFVINILVI 282

>sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transporter (GABA and glycine
           transporter) (Vesicular GABA transporter) (rGVAT)
           (Solute carrier family 32 member 1)
          Length = 525

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 112 CYFITQTKAVNNFS*KCATFHFVNNTILM 26
           C F+   KAV+ FS  C   HFV N +++
Sbjct: 254 CAFLKNLKAVSKFSLLCTLAHFVINILVI 282

>sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid transporter (GABA and glycine
           transporter) (Vesicular GABA transporter) (mVIAAT)
           (mVGAT) (Solute carrier family 32 member 1)
          Length = 525

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 112 CYFITQTKAVNNFS*KCATFHFVNNTILM 26
           C F+   KAV+ FS  C   HFV N +++
Sbjct: 254 CAFLKNLKAVSKFSLLCTLAHFVINILVI 282

>sp|Q95KE2|VIAAT_MACFA Vesicular inhibitory amino acid transporter (GABA and glycine
           transporter) (Vesicular GABA transporter) (Solute
           carrier family 32 member 1)
          Length = 525

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 112 CYFITQTKAVNNFS*KCATFHFVNNTILM 26
           C F+   KAV+ FS  C   HFV N +++
Sbjct: 254 CAFLKNLKAVSKFSLLCTLAHFVINILVI 282

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,627,318
Number of Sequences: 369166
Number of extensions: 452923
Number of successful extensions: 744
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00185

  1. Dr_sW_005_K22
  2. Dr_sW_005_I20