Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_K22
(392 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03705|YMD6_YEAST Hypothetical 20.7 kDa protein in CAT2-... 31 0.78
sp|P41842|YO91_CAEEL Hypothetical protein T20B12.1 in chrom... 29 3.0
sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid trans... 28 6.6
sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transpo... 28 6.6
sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid trans... 28 6.6
sp|Q95KE2|VIAAT_MACFA Vesicular inhibitory amino acid trans... 28 6.6
>sp|Q03705|YMD6_YEAST Hypothetical 20.7 kDa protein in CAT2-AMD1 intergenic region
Length = 181
Score = 31.2 bits (69), Expect = 0.78
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +2
Query: 44 HKMKCSTLSAEIIYCLSLSNKITNCFKQIGIQTSTKSIIAI 166
+KM+ L++E + CLS ++ I++ F + GI+ + +I +
Sbjct: 67 NKMRTRNLNSECVLCLSPTSNISDAFLKFGIKDDSSQLICL 107
>sp|P41842|YO91_CAEEL Hypothetical protein T20B12.1 in chromosome III
Length = 787
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/59 (23%), Positives = 34/59 (57%)
Frame = +2
Query: 35 GIIHKMKCSTLSAEIIYCLSLSNKITNCFKQIGIQTSTKSIIAILLLPKDQTKDSSITH 211
GI++ + C++ + I+ L + + + +C+KQ+G +++I L+ +Q + S+ H
Sbjct: 387 GILNSLGCTSEALLILEKLEMWDGVIDCYKQLGQMDKAETLIRRLI---EQKPNDSMLH 442
>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter (GABA and glycine
transporter) (Vesicular GABA transporter) (hVIAAT)
(Solute carrier family 32 member 1)
Length = 525
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 112 CYFITQTKAVNNFS*KCATFHFVNNTILM 26
C F+ KAV+ FS C HFV N +++
Sbjct: 254 CAFLKNLKAVSKFSLLCTLAHFVINILVI 282
>sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transporter (GABA and glycine
transporter) (Vesicular GABA transporter) (rGVAT)
(Solute carrier family 32 member 1)
Length = 525
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 112 CYFITQTKAVNNFS*KCATFHFVNNTILM 26
C F+ KAV+ FS C HFV N +++
Sbjct: 254 CAFLKNLKAVSKFSLLCTLAHFVINILVI 282
>sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid transporter (GABA and glycine
transporter) (Vesicular GABA transporter) (mVIAAT)
(mVGAT) (Solute carrier family 32 member 1)
Length = 525
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 112 CYFITQTKAVNNFS*KCATFHFVNNTILM 26
C F+ KAV+ FS C HFV N +++
Sbjct: 254 CAFLKNLKAVSKFSLLCTLAHFVINILVI 282
>sp|Q95KE2|VIAAT_MACFA Vesicular inhibitory amino acid transporter (GABA and glycine
transporter) (Vesicular GABA transporter) (Solute
carrier family 32 member 1)
Length = 525
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 112 CYFITQTKAVNNFS*KCATFHFVNNTILM 26
C F+ KAV+ FS C HFV N +++
Sbjct: 254 CAFLKNLKAVSKFSLLCTLAHFVINILVI 282
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,227,753
Number of Sequences: 369166
Number of extensions: 437962
Number of successful extensions: 747
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)