Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_I20
(368 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03705|YMD6_YEAST Hypothetical 20.7 kDa protein in CAT2-... 31 0.78
sp|P57363|ISPZ_BUCAI Probable intracellular septation protein 30 1.3
>sp|Q03705|YMD6_YEAST Hypothetical 20.7 kDa protein in CAT2-AMD1 intergenic region
Length = 181
Score = 31.2 bits (69), Expect = 0.78
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +1
Query: 22 HKMKCSTLSAEIIYCLSLSNKITNCFKQIGIQTSTKSIIAI 144
+KM+ L++E + CLS ++ I++ F + GI+ + +I +
Sbjct: 67 NKMRTRNLNSECVLCLSPTSNISDAFLKFGIKDDSSQLICL 107
>sp|P57363|ISPZ_BUCAI Probable intracellular septation protein
Length = 177
Score = 30.4 bits (67), Expect = 1.3
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Frame = -1
Query: 356 IYFRKISFVTILFMI*MSILS------FEESLSVN**RFLIDSMSISFSLITSLLYTIK 198
IY+RKI+F+ LF + +IL+ F E++ VN F S++ LITS+ K
Sbjct: 114 IYWRKINFIWSLFFLFCAILNIYIAYYFSETIWVNFKVFGFTSLTFFLILITSIYINCK 172
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,172,293
Number of Sequences: 369166
Number of extensions: 407371
Number of successful extensions: 720
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)