Planarian EST Database

DrC_00175

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00175 TCATGAATTCAAGAACCAAAAATCGAGATGCGGTAATGATATTCGATAAAATGTCGAAAG AATGTTTAGAAGAATTAAATAAATTGGACAAATCGATGTCTGAAGAAATTGTTAAACTTG ATATTTCATGCAATGTCGAATACTCAAAAATAGCAAAACAATGTAATAAAGAAGATAATG AATTGCTTGACAAATGTTTAGAAAGCAGAAAATGAAATTTCTTTTAATAAACGTTTTAAA TGATTAAATATTATTAAAATGTTTTC

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00175
         (266 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P33985|RP542_RHIME  RNA polymerase sigma-54 factor              33   0.27 
sp|P17263|RP541_RHIME  RNA polymerase sigma-54 factor              33   0.27 
sp|P40473|YIM2_YEAST  Hypothetical 39.5 kDa protein in SIM1-...    32   0.60 
sp|P46961|GPI2_YEAST  Phosphatidylinositol N-acetylglucosami...    31   0.79 
sp|P48561|TRF5_YEAST  Topoisomerase 1-related protein TRF5         31   1.0  
sp|Q8C9S4|CJ118_MOUSE  Protein C10orf118 homolog (Oocyte-tes...    30   1.3  
sp|Q7Z3E2|CJ118_HUMAN  Protein C10orf118 (CTCL tumor antigen...    30   2.3  
sp|P30332|RP54_BRAJA  RNA polymerase sigma-54 factor 1             29   3.0  
sp|Q5NIL6|RBFA_FRATT  Ribosome-binding factor A                    29   3.0  
sp|P30333|RP55_BRAJA  RNA polymerase sigma-54 factor 2             29   3.9

>sp|P33985|RP542_RHIME RNA polymerase sigma-54 factor
          Length = 513

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +3

Query: 39  IFDKMSKECL----EELNKLDKSMSEEIVKLDISCNVEYSKIAKQCNKEDNELLDKCLES 206
           +F +   ECL       N+LD +M   +  LD+    +++ + K C  ++ +L+D   E 
Sbjct: 219 VFARTLGECLGLQLRARNRLDPAMEALVGNLDLLARRDFASLKKICGVDEEDLIDMFAEI 278

Query: 207 RK 212
           RK
Sbjct: 279 RK 280

>sp|P17263|RP541_RHIME RNA polymerase sigma-54 factor
          Length = 514

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
 Frame = +3

Query: 39  IFDKMSKECL----EELNKLDKSMSEEIVKLDISCNVEYSKIAKQCNKEDNELLDKCLES 206
           +F +   ECL       N+LD +M   +  L++    +++ + K C  ++ +L+D   E 
Sbjct: 218 VFARTLGECLAIQLRARNRLDPAMEALVANLELLARRDFASLKKICGVDEEDLIDMLAEI 277

Query: 207 RK 212
           RK
Sbjct: 278 RK 279

>sp|P40473|YIM2_YEAST Hypothetical 39.5 kDa protein in SIM1-RPI1 intergenic region
          Length = 351

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +3

Query: 33  VMIFDKMSKECLEELNKLDKSMSEEIVKLD-ISCNVEYSKIAKQCNKEDNELLDKCLESR 209
           + I  ++  + ++ELN  D  + E+ + +  I+   E  KI +    + N+++DKC+ES 
Sbjct: 62  IRILKQLGFDDIQELNACDTGLVEQFLNVRLINDTKELEKIRESNLAKLNQIIDKCMESD 121

Query: 210 K 212
           K
Sbjct: 122 K 122

>sp|P46961|GPI2_YEAST Phosphatidylinositol N-acetylglucosaminyltransferase GPI2 subunit
          Length = 280

 Score = 31.2 bits (69), Expect = 0.79
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -3

Query: 213 IFCFLNICQAIHYLL-YYIVLLFLSIRHCMKYQV*QFLQTSICPIYLILLNILSTFYRIS 37
           +FCFL IC  ++ +L  Y+ +    +       V  FL  ++  IY++L+   S FY   
Sbjct: 190 VFCFLLICIQLNIILPTYLSVTNKVVPIISNIIVYSFLNVALGWIYMLLIFFASVFYITV 249

Query: 36  LPHLDFWFL 10
           LP    WF+
Sbjct: 250 LPK---WFI 255

>sp|P48561|TRF5_YEAST Topoisomerase 1-related protein TRF5
          Length = 625

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 45  DKMSKECLEELNKLDKSMSEEIVKLDISCNVEYSKIAKQCNKEDNELLD 191
           D+ S   L + +++ K  S++ +  + +CNVEY  I   C+ +   + D
Sbjct: 126 DERSSFLLTDEHEVSKLTSQQSLNTESACNVEYPWIRNHCHSKQRRIAD 174

>sp|Q8C9S4|CJ118_MOUSE Protein C10orf118 homolog (Oocyte-testis gene 1 protein)
          Length = 917

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +3

Query: 3   MNSRTKNRDAVMIFDKMSKECLEELNKLDKSMSEEIVKLDISCNVEYSKIAKQCNKEDNE 182
           +  RT+     M   K  +  +EELNK  K+  +++V  D++      +I K+  +  ++
Sbjct: 256 LRKRTETEKQHMNTIKQLELRIEELNKEIKASKDQLVAQDVTAKNAIQQIHKEMAQRMDQ 315

Query: 183 LLDKCLESRK 212
              KC E+R+
Sbjct: 316 ANKKCEEARQ 325

>sp|Q7Z3E2|CJ118_HUMAN Protein C10orf118 (CTCL tumor antigen HD-CL-01/L14-2)
          Length = 898

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +3

Query: 3   MNSRTKNRDAVMIFDKMSKECLEELNKLDKSMSEEIVKLDISCNVEYSKIAKQCNKEDNE 182
           +  RT+     M   K  +  +EELNK  K+  ++++  D++      ++ K+  +   +
Sbjct: 237 LKKRTETEKQHMNTIKQLESRIEELNKEVKASRDQLIAQDVTAKNAVQQLHKEMAQRMEQ 296

Query: 183 LLDKCLESRK 212
              KC E+R+
Sbjct: 297 ANKKCEEARQ 306

>sp|P30332|RP54_BRAJA RNA polymerase sigma-54 factor 1
          Length = 484

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +3

Query: 57  KECL----EELNKLDKSMSEEIVKLDISCNVEYSKIAKQCNKEDNELLDKCLESRK 212
           +ECL     EL++ D +M   +  LD+    + + + K C  +D ++ D   E R+
Sbjct: 187 RECLAIQLRELDRYDPAMQALVEHLDLLAKRDIASLRKLCGVDDEDIADMIDELRR 242

>sp|Q5NIL6|RBFA_FRATT Ribosome-binding factor A
          Length = 143

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 42  FDKMSKECLEELNKLDKSMSEEIVKLDISCNVEYSKIAKQCNK-EDNELLDKCLESRK 212
           F K+    L    K  K  S  I ++D+S ++ Y+KI   C   ED E +DK  E  K
Sbjct: 14  FQKVISLLLRTRIKDAKLASATITEVDLSKDLSYAKIYYTCLAIEDAEYIDKAFEKSK 71

>sp|P30333|RP55_BRAJA RNA polymerase sigma-54 factor 2
          Length = 537

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 66  LEELNKLDKSMSEEIVKLDISCNVEYSKIAKQCNKEDNELLDKCLESRK*N 218
           L EL++ D +M   +  LD+    + + + K C  +D ++ D   E R+ N
Sbjct: 242 LRELDRYDPAMQALVEHLDLLAKRDIAGLRKVCGVDDEDIADMIGEIRRLN 292

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,751,649
Number of Sequences: 369166
Number of extensions: 355089
Number of successful extensions: 1305
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00175

Planaria EST Database

DrC_00175

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail