Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_H21
(208 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P33985|RP542_RHIME RNA polymerase sigma-54 factor 33 0.20
sp|P17263|RP541_RHIME RNA polymerase sigma-54 factor 33 0.20
sp|Q5NIL6|RBFA_FRATT Ribosome-binding factor A 30 1.3
sp|Q9UBN4|TRPC4_HUMAN Short transient receptor potential ch... 28 8.6
sp|Q9QUQ5|TRPC4_MOUSE Short transient receptor potential ch... 28 8.6
sp|P79100|TRPC4_BOVIN Short transient receptor potential ch... 28 8.6
sp|Q8K9X4|Y160_BUCAP Hypothetical protein BUsg160 28 8.6
sp|O35119|TRPC4_RAT Short transient receptor potential chan... 28 8.6
sp|P48561|TRF5_YEAST Topoisomerase 1-related protein TRF5 28 8.6
>sp|P33985|RP542_RHIME RNA polymerase sigma-54 factor
Length = 513
Score = 33.1 bits (74), Expect = 0.20
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 17 RNKLDKSMSEEIVKLDISCNVEYSKIAKQCNKEDNELLDKCLESRK 154
RN+LD +M + LD+ +++ + K C ++ +L+D E RK
Sbjct: 235 RNRLDPAMEALVGNLDLLARRDFASLKKICGVDEEDLIDMFAEIRK 280
>sp|P17263|RP541_RHIME RNA polymerase sigma-54 factor
Length = 514
Score = 33.1 bits (74), Expect = 0.20
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +2
Query: 17 RNKLDKSMSEEIVKLDISCNVEYSKIAKQCNKEDNELLDKCLESRK 154
RN+LD +M + L++ +++ + K C ++ +L+D E RK
Sbjct: 234 RNRLDPAMEALVANLELLARRDFASLKKICGVDEEDLIDMLAEIRK 279
>sp|Q5NIL6|RBFA_FRATT Ribosome-binding factor A
Length = 143
Score = 30.4 bits (67), Expect = 1.3
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 14 TRNKLDKSMSEEIVKLDISCNVEYSKIAKQCNK-EDNELLDKCLESRK 154
TR K K S I ++D+S ++ Y+KI C ED E +DK E K
Sbjct: 24 TRIKDAKLASATITEVDLSKDLSYAKIYYTCLAIEDAEYIDKAFEKSK 71
>sp|Q9UBN4|TRPC4_HUMAN Short transient receptor potential channel 4 (TrpC4) (trp-related
protein 4) (hTrp-4) (hTrp4)
Length = 977
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 44 EEIVKLDISCNVEYSKIAKQCNKEDNELLDKCLESRK 154
+E+ K++ EY ++++QC + +LLD+ SR+
Sbjct: 228 QELSKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRE 264
>sp|Q9QUQ5|TRPC4_MOUSE Short transient receptor potential channel 4 (TrpC4)
(Receptor-activated cation channel TRP4) (Capacitative
calcium entry channel Trp4)
Length = 974
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 44 EEIVKLDISCNVEYSKIAKQCNKEDNELLDKCLESRK 154
+E+ K++ EY ++++QC + +LLD+ SR+
Sbjct: 228 QELSKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRE 264
>sp|P79100|TRPC4_BOVIN Short transient receptor potential channel 4 (TrpC4) (Capacitative
calcium entry channel 1) (CCE1)
Length = 981
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 44 EEIVKLDISCNVEYSKIAKQCNKEDNELLDKCLESRK 154
+E+ K++ EY ++++QC + +LLD+ SR+
Sbjct: 230 QELSKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRE 266
>sp|Q8K9X4|Y160_BUCAP Hypothetical protein BUsg160
Length = 310
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 200 FNNI*SFKTFIKRNFIFYFL 141
F NI K F K NF FYFL
Sbjct: 24 FKNIKKIKLFSKNNFFFYFL 43
>sp|O35119|TRPC4_RAT Short transient receptor potential channel 4 (TrpC4) (Trp4)
(Capacitative calcium entry channel 1) (CCE1)
Length = 977
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 44 EEIVKLDISCNVEYSKIAKQCNKEDNELLDKCLESRK 154
+E+ K++ EY ++++QC + +LLD+ SR+
Sbjct: 228 QELSKVENEFKSEYEELSRQCKQFAKDLLDQTRSSRE 264
>sp|P48561|TRF5_YEAST Topoisomerase 1-related protein TRF5
Length = 625
Score = 27.7 bits (60), Expect = 8.6
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +2
Query: 20 NKLDKSMSEEIVKLDISCNVEYSKIAKQCNKEDNELLD 133
+++ K S++ + + +CNVEY I C+ + + D
Sbjct: 137 HEVSKLTSQQSLNTESACNVEYPWIRNHCHSKQRRIAD 174
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,508,550
Number of Sequences: 369166
Number of extensions: 261932
Number of successful extensions: 789
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 68,354,980
effective HSP length: 40
effective length of database: 60,965,580
effective search space used: 1707036240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)