Planaria EST Database

DrC_00166

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00166
         (846 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P13233|CN37_RAT  2',3'-cyclic-nucleotide 3'-phosphodieste...    63   1e-09
sp|P16330|CN37_MOUSE  2',3'-cyclic-nucleotide 3'-phosphodies...    60   8e-09
sp|P09543|CN37_HUMAN  2',3'-cyclic-nucleotide 3'-phosphodies...    55   3e-07
sp|P06623|CN37_BOVIN  2',3'-cyclic-nucleotide 3'-phosphodies...    49   2e-05
sp|Q4JBP0|SYL1_SULAC  Leucyl-tRNA synthetase 1 (Leucine--tRN...    37   0.090
sp|Q8BJQ9|CGAT1_MOUSE  Chondroitin beta-1,4-N-acetylgalactos...    35   0.34 
sp|Q8TDX6|CGAT1_HUMAN  Chondroitin beta-1,4-N-acetylgalactos...    35   0.34 
sp|P42125|D3D2_MOUSE  3,2-trans-enoyl-CoA isomerase, mitocho...    32   2.2  
sp|P47029|YJI4_YEAST  Hypothetical 117.2 kDa protein in EXO7...    31   3.8  
sp|P23729|IF3T_TORCA  Type III intermediate filament               31   4.9  

>sp|P13233|CN37_RAT 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
          Length = 420

 Score = 62.8 bits (151), Expect = 1e-09
 Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 16/187 (8%)
 Frame = +2

Query: 179 IDDINSHKSKFSGDKRAVPNFVGWFWDDSDQDDLHKIALKALKEIISLEDVQRQLKKNIT 358
           +DD+   K K   +K  +P + GWF      + L K     L+E+ + +  +++L+  I+
Sbjct: 170 LDDLK--KLKPGLEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFIS 227

Query: 359 ------RKDLIDYWIKQKKR-LHVTAMYI--GKKLTNETFPYLENVSKMFKTTTKVKVSG 511
                 + DL+ Y+ K+    LH T  +   GK    E +   + V + +    K+ +S 
Sbjct: 228 GDEPKEKLDLVSYFGKRPPGVLHCTTKFCDYGKATGAEEYAQQDVVRRSYGKAFKLSISA 287

Query: 512 FLLTPRTFSGHVVLPED--TKWMFDPDKSNEFQLLP-----HVTERVAPGISPVQSGIDQ 670
             +TP+T    VVL E     W  D DK +  + LP     HVT   A  + PVQ+G+D 
Sbjct: 288 LFVTPKTAGAQVVLNEQELQLWPSDLDKPSSSESLPPGSRAHVTLGCAADVQPVQTGLDL 347

Query: 671 LPVQKMI 691
           L + + +
Sbjct: 348 LEILQQV 354

>sp|P16330|CN37_MOUSE 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
          Length = 420

 Score = 60.1 bits (144), Expect = 8e-09
 Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
 Frame = +2

Query: 182 DDINSHKSKFSGDKRAVPNFVGWFWDDSDQDDLHKIALKALKEIISLEDVQRQLKKNIT- 358
           DD+   K K   +K  +P + GWF      + L K     L+E+ + +  +++L+  I+ 
Sbjct: 171 DDLK--KLKPGLEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISG 228

Query: 359 -----RKDLIDYWIKQKKR-LHVTAMYI--GKKLTNETFPYLENVSKMFKTTTKVKVSGF 514
                + +L+ Y+ K+    LH T  +   GK    E +   E V + +    K+ +S  
Sbjct: 229 DEPKEKLELVSYFGKRPPGVLHCTTKFCDYGKAAGAEEYAQQEVVKRSYGKAFKLSISAL 288

Query: 515 LLTPRTFSGHVVLPED--TKWMFDPDKSNEFQLLP-----HVTERVAPGISPVQSGIDQL 673
            +TP+T    VVL +     W  D DK +  + LP     HVT   A  + PVQ+G+D L
Sbjct: 289 FVTPKTAGAQVVLTDQELQLWPSDLDKPSASEGLPPGSRAHVTLGCAADVQPVQTGLDLL 348

Query: 674 PVQKMI 691
            + + +
Sbjct: 349 DILQQV 354

>sp|P09543|CN37_HUMAN 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
          Length = 421

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 16/215 (7%)
 Frame = +2

Query: 182 DDINSHKSKFSGDKRAVPNFVGWFWDDSDQDDLHKIALKALKEIISLEDVQRQLKKNIT- 358
           DD+   K K   +K  +P + GWF      + L K     L+E+ + +  +++L++ +  
Sbjct: 172 DDLK--KLKPGLEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRQFVPG 229

Query: 359 -----RKDLIDYWIKQKKR-LHVTAMYI--GKKLTNETFPYLENVSKMFKTTTKVKVSGF 514
                + DL+ Y+ K+    LH T  +   GK    E +   + + K +     + +S  
Sbjct: 230 DEpreKMDLVTYFGKRPPGVLHCTTKFCDYGKAPGAEEYAQQDVLKKSYSKAFTLTISAL 289

Query: 515 LLTPRTFSGHVVLPEDTK--WMFDPDKSNEFQLLP-----HVTERVAPGISPVQSGIDQL 673
            +TP+T    V L E     W  D DK +    LP     H+T   A  +  VQ+G+D L
Sbjct: 290 FVTPKTTGARVELSEQQLQLWPSDVDKLSPTDNLPRGSRAHITLGCAADVEAVQTGLDLL 349

Query: 674 PVQKMIVEMKLPKQEFSISLGLVQDWGNCQFYLVL 778
            + +        ++   +S G +   GN ++ L L
Sbjct: 350 EILRQEKGGSRGEEVGELSRGKLYSLGNGRWMLTL 384

>sp|P06623|CN37_BOVIN 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
          Length = 400

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 16/215 (7%)
 Frame = +2

Query: 182 DDINSHKSKFSGDKRAVPNFVGWFWDDSDQDDLHKIALKALKEIISLEDVQRQLKKNIT- 358
           DD+   K K   +K  +P + GWF        L K     L+E+ + +  +++L+  ++ 
Sbjct: 151 DDLK--KLKPGLEKDFLPLYFGWFLTKKSSAALWKTGQTFLEELGNHKAFKKELRHFVSG 208

Query: 359 -----RKDLIDYWIKQKKR-LHVTAMYI--GKKLTNETFPYLENVSKMFKTTTKVKVSGF 514
                + +L+ Y+ K+    LH T  +   GK    E +   + V K +     + +S  
Sbjct: 209 DEpreKIELVTYFGKRPPGVLHCTTKFCDYGKAAGAEEYAQQDVVKKSYCKAFTLTISAL 268

Query: 515 LLTPRTFSGHVVLPED--TKWMFDPDKSNEFQLLP-----HVTERVAPGISPVQSGIDQL 673
            +TP+T    V L E     W  D DK +    LP     H+T   A  +  VQ+GID L
Sbjct: 269 FVTPKTTGARVELSEQQLALWPNDVDKLSPSDNLPRGSRAHITLGCAGDVEAVQTGIDLL 328

Query: 674 PVQKMIVEMKLPKQEFSISLGLVQDWGNCQFYLVL 778
            + +        ++   +S G +   G+ ++ L L
Sbjct: 329 EIVRQEKGGSRGEEVGELSRGKLYSLGSGRWMLSL 363

>sp|Q4JBP0|SYL1_SULAC Leucyl-tRNA synthetase 1 (Leucine--tRNA ligase 1) (LeuRS 1)
          Length = 942

 Score = 36.6 bits (83), Expect = 0.090
 Identities = 23/61 (37%), Positives = 37/61 (60%)
 Frame = +2

Query: 161 EHIEDQIDDINSHKSKFSGDKRAVPNFVGWFWDDSDQDDLHKIALKALKEIISLEDVQRQ 340
           E++   ID INS KSK S +   V  +V    +D+ Q DL + A+++LKE  SL D +++
Sbjct: 805 EYLRYTIDLINSMKSKMSKEPETVIIYVN---EDNTQRDLIRKAIESLKERKSLPDFEKE 861

Query: 341 L 343
           +
Sbjct: 862 V 862

>sp|Q8BJQ9|CGAT1_MOUSE Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 1
           (beta4GalNAcT-1)
          Length = 530

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +2

Query: 383 IKQKKRLHVTAMYIGKKLTNETFPYLENVSKM--FKTTTKVKVSG 511
           I+Q  R+H+T +Y GK+  NE    LEN SK   F+  T ++++G
Sbjct: 286 IQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANFRNFTFIQLNG 330

>sp|Q8TDX6|CGAT1_HUMAN Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 1
           (beta4GalNAcT-1)
          Length = 532

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +2

Query: 383 IKQKKRLHVTAMYIGKKLTNETFPYLENVSKM--FKTTTKVKVSG 511
           I+Q  R+H+T +Y GK+  NE    LEN SK   F+  T ++++G
Sbjct: 288 IEQDGRVHLTVVYFGKEEINEVKGILENTSKAANFRNFTFIQLNG 332

>sp|P42125|D3D2_MOUSE 3,2-trans-enoyl-CoA isomerase, mitochondrial precursor
           (Dodecenoyl-CoA isomerase) (Delta(3),delta(2)-enoyl-CoA
           isomerase) (D3,D2-enoyl-CoA isomerase)
          Length = 289

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 269 QDDLHKIALKALKEIISLEDVQRQLKKNITRKDLIDYWIKQKK 397
           +D +H  A   + + +++ D  RQL KN+ RK   D  IKQ++
Sbjct: 216 EDQVHSKARSVMTKWLAIPDHSRQLTKNMMRKATADNLIKQRE 258

>sp|P47029|YJI4_YEAST Hypothetical 117.2 kDa protein in EXO70-ARP4 intergenic region
          Length = 1046

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 668  DQYLTEQDLYPELLSLSHGATVEIHSIYRGQTSIWYPL 555
            D +L   D Y +LL  S   T++I + Y   +S W+PL
Sbjct: 923  DSFLRPNDSYVDLLEPSVDTTIDITAPYARNSSAWHPL 960

>sp|P23729|IF3T_TORCA Type III intermediate filament
          Length = 458

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +2

Query: 143 GNVYNQE--HIEDQIDDINSHKSKFSGDKRAVPNFVGWFWDDSDQDDLHKIALKALKEII 316
           G++Y QE   +  QID I++ KS+   ++            D+  DDL K+  K   E+I
Sbjct: 141 GDLYEQELRELRLQIDQISNEKSRVEVER------------DNLADDLQKLREKLQDEVI 188

Query: 317 SLEDVQRQL 343
             ED +  L
Sbjct: 189 QREDAENNL 197

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,027,516
Number of Sequences: 369166
Number of extensions: 2058150
Number of successful extensions: 5563
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5558
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00166

  1. Dr_sW_005_B09
  2. Dr_sW_026_N03
  3. Dr_sW_008_D24
  4. Dr_sW_019_A13