Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_N03
(452 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13233|CN37_RAT 2',3'-cyclic-nucleotide 3'-phosphodieste... 47 2e-05
sp|P16330|CN37_MOUSE 2',3'-cyclic-nucleotide 3'-phosphodies... 47 3e-05
sp|P09543|CN37_HUMAN 2',3'-cyclic-nucleotide 3'-phosphodies... 40 0.002
sp|P06623|CN37_BOVIN 2',3'-cyclic-nucleotide 3'-phosphodies... 39 0.007
sp|Q8BJQ9|CGAT1_MOUSE Chondroitin beta-1,4-N-acetylgalactos... 32 0.65
sp|Q8TDX6|CGAT1_HUMAN Chondroitin beta-1,4-N-acetylgalactos... 32 0.65
sp|P47029|YJI4_YEAST Hypothetical 117.2 kDa protein in EXO7... 31 1.1
sp|Q7ZVT3|SAS6_BRARE Spindle assembly abnormal protein 6 ho... 29 5.5
sp|Q10744|PEPC_LACHE Aminopeptidase C (Bleomycin hydrolase) 28 7.2
sp|P35654|HRPI_ERWAM Harpin secretion protein hrpI 28 9.4
>sp|P13233|CN37_RAT 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
Length = 420
Score = 47.0 bits (110), Expect = 2e-05
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Frame = +1
Query: 7 LHVTAMYI--GKKLTNETFPYLENVSKMFKTTTKVKVSGFLLTPRTFSGHVVLPED--TK 174
LH T + GK E + + V + + K+ +S +TP+T VVL E
Sbjct: 249 LHCTTKFCDYGKATGAEEYAQQDVVRRSYGKAFKLSISALFVTPKTAGAQVVLNEQELQL 308
Query: 175 WMFDPDKSNEFQLLP-----HVTERVAPGISPVQSGIDQLPVQKMI 297
W D DK + + LP HVT A + PVQ+G+D L + + +
Sbjct: 309 WPSDLDKPSSSESLPPGSRAHVTLGCAADVQPVQTGLDLLEILQQV 354
>sp|P16330|CN37_MOUSE 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
Length = 420
Score = 46.6 bits (109), Expect = 3e-05
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 9/106 (8%)
Frame = +1
Query: 7 LHVTAMYI--GKKLTNETFPYLENVSKMFKTTTKVKVSGFLLTPRTFSGHVVLPED--TK 174
LH T + GK E + E V + + K+ +S +TP+T VVL +
Sbjct: 249 LHCTTKFCDYGKAAGAEEYAQQEVVKRSYGKAFKLSISALFVTPKTAGAQVVLTDQELQL 308
Query: 175 WMFDPDKSNEFQLLP-----HVTERVAPGISPVQSGIDQLPVQKMI 297
W D DK + + LP HVT A + PVQ+G+D L + + +
Sbjct: 309 WPSDLDKPSASEGLPPGSRAHVTLGCAADVQPVQTGLDLLDILQQV 354
>sp|P09543|CN37_HUMAN 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
Length = 421
Score = 40.0 bits (92), Expect = 0.002
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 9/135 (6%)
Frame = +1
Query: 7 LHVTAMYI--GKKLTNETFPYLENVSKMFKTTTKVKVSGFLLTPRTFSGHVVLPEDTK-- 174
LH T + GK E + + + K + + +S +TP+T V L E
Sbjct: 250 LHCTTKFCDYGKAPGAEEYAQQDVLKKSYSKAFTLTISALFVTPKTTGARVELSEQQLQL 309
Query: 175 WMFDPDKSNEFQLLP-----HVTERVAPGISPVQSGIDQLPVQKMIVEMKLPKQEFSISL 339
W D DK + LP H+T A + VQ+G+D L + + ++ +S
Sbjct: 310 WPSDVDKLSPTDNLPRGSRAHITLGCAADVEAVQTGLDLLEILRQEKGGSRGEEVGELSR 369
Query: 340 GLVQDWGNCQFYLVL 384
G + GN ++ L L
Sbjct: 370 GKLYSLGNGRWMLTL 384
>sp|P06623|CN37_BOVIN 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
Length = 400
Score = 38.5 bits (88), Expect = 0.007
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 9/135 (6%)
Frame = +1
Query: 7 LHVTAMYI--GKKLTNETFPYLENVSKMFKTTTKVKVSGFLLTPRTFSGHVVLPED--TK 174
LH T + GK E + + V K + + +S +TP+T V L E
Sbjct: 229 LHCTTKFCDYGKAAGAEEYAQQDVVKKSYCKAFTLTISALFVTPKTTGARVELSEQQLAL 288
Query: 175 WMFDPDKSNEFQLLP-----HVTERVAPGISPVQSGIDQLPVQKMIVEMKLPKQEFSISL 339
W D DK + LP H+T A + VQ+GID L + + ++ +S
Sbjct: 289 WPNDVDKLSPSDNLPRGSRAHITLGCAGDVEAVQTGIDLLEIVRQEKGGSRGEEVGELSR 348
Query: 340 GLVQDWGNCQFYLVL 384
G + G+ ++ L L
Sbjct: 349 GKLYSLGSGRWMLSL 363
>sp|Q8BJQ9|CGAT1_MOUSE Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 1
(beta4GalNAcT-1)
Length = 530
Score = 32.0 bits (71), Expect = 0.65
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 4 RLHVTAMYIGKKLTNETFPYLENVSKM--FKTTTKVKVSG 117
R+H+T +Y GK+ NE LEN SK F+ T ++++G
Sbjct: 291 RVHLTVVYFGKEEMNEVKGILENTSKAANFRNFTFIQLNG 330
>sp|Q8TDX6|CGAT1_HUMAN Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 1
(beta4GalNAcT-1)
Length = 532
Score = 32.0 bits (71), Expect = 0.65
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = +1
Query: 4 RLHVTAMYIGKKLTNETFPYLENVSKM--FKTTTKVKVSG 117
R+H+T +Y GK+ NE LEN SK F+ T ++++G
Sbjct: 293 RVHLTVVYFGKEEINEVKGILENTSKAANFRNFTFIQLNG 332
>sp|P47029|YJI4_YEAST Hypothetical 117.2 kDa protein in EXO70-ARP4 intergenic region
Length = 1046
Score = 31.2 bits (69), Expect = 1.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 274 DQYLTEQDLYPELLSLSHGATVEIHSIYQGQTSIWYPL 161
D +L D Y +LL S T++I + Y +S W+PL
Sbjct: 923 DSFLRPNDSYVDLLEPSVDTTIDITAPYARNSSAWHPL 960
>sp|Q7ZVT3|SAS6_BRARE Spindle assembly abnormal protein 6 homolog
Length = 627
Score = 28.9 bits (63), Expect = 5.5
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -2
Query: 325 ILVSVTSFPQSFFELVIDQYLTEQDLYPE--LLSLSHGATVEIHS 197
+L+ TSFPQ F +L ++Q + EQD LL LS ++ HS
Sbjct: 76 LLIDFTSFPQKFIDL-LEQCICEQDKESPRFLLQLSSSSSAFDHS 119
>sp|Q10744|PEPC_LACHE Aminopeptidase C (Bleomycin hydrolase)
Length = 449
Score = 28.5 bits (62), Expect = 7.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 154 VLPEDTKWMFDPDKSNEFQLLP 219
+LPED K +D K N QLLP
Sbjct: 417 ILPEDLKKAYDEGKDNPIQLLP 438
>sp|P35654|HRPI_ERWAM Harpin secretion protein hrpI
Length = 697
Score = 28.1 bits (61), Expect = 9.4
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 7 LHVTAMYIGKKLTNETFPYLENVSKMFKTTTKVKVSGFLLTPRTFSGHVV 156
L V AMY+ K L TFP + ++ MF+ + + +L + +GH+V
Sbjct: 57 LIVLAMYLPKPLAFSTFPSVLLLTTMFRLALSISTTRQILLQQD-AGHIV 105
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,911,415
Number of Sequences: 369166
Number of extensions: 1040886
Number of successful extensions: 2780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2778
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)