Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_A13
(760 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13233|CN37_RAT 2',3'-cyclic-nucleotide 3'-phosphodieste... 63 1e-09
sp|P16330|CN37_MOUSE 2',3'-cyclic-nucleotide 3'-phosphodies... 60 6e-09
sp|P09543|CN37_HUMAN 2',3'-cyclic-nucleotide 3'-phosphodies... 55 3e-07
sp|P06623|CN37_BOVIN 2',3'-cyclic-nucleotide 3'-phosphodies... 49 2e-05
sp|Q4JBP0|SYL1_SULAC Leucyl-tRNA synthetase 1 (Leucine--tRN... 37 0.075
sp|Q8BJQ9|CGAT1_MOUSE Chondroitin beta-1,4-N-acetylgalactos... 35 0.29
sp|Q8TDX6|CGAT1_HUMAN Chondroitin beta-1,4-N-acetylgalactos... 35 0.29
sp|P42125|D3D2_MOUSE 3,2-trans-enoyl-CoA isomerase, mitocho... 32 1.9
sp|P47029|YJI4_YEAST Hypothetical 117.2 kDa protein in EXO7... 31 3.2
sp|P23729|IF3T_TORCA Type III intermediate filament 31 4.1
>sp|P13233|CN37_RAT 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
Length = 420
Score = 62.8 bits (151), Expect = 1e-09
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 16/187 (8%)
Frame = +3
Query: 93 IDDINSHKSKFSGDKRAVPNFVGWFWDDSDQDDLHKIALKALKEIISLEDVQRQLKKNIT 272
+DD+ K K +K +P + GWF + L K L+E+ + + +++L+ I+
Sbjct: 170 LDDLK--KLKPGLEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFIS 227
Query: 273 ------RKDLIDYWIKQKKR-LHVTAMYI--GKKLTNETFPYLENVSKMFKTTTKVKVSG 425
+ DL+ Y+ K+ LH T + GK E + + V + + K+ +S
Sbjct: 228 GDEPKEKLDLVSYFGKRPPGVLHCTTKFCDYGKATGAEEYAQQDVVRRSYGKAFKLSISA 287
Query: 426 FLLTPRTFSGHVVLPED--TKWMFDPDKSNEFQLLP-----HVTERVAPGISPVQSGIDQ 584
+TP+T VVL E W D DK + + LP HVT A + PVQ+G+D
Sbjct: 288 LFVTPKTAGAQVVLNEQELQLWPSDLDKPSSSESLPPGSRAHVTLGCAADVQPVQTGLDL 347
Query: 585 LPVQKMI 605
L + + +
Sbjct: 348 LEILQQV 354
>sp|P16330|CN37_MOUSE 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
Length = 420
Score = 60.1 bits (144), Expect = 6e-09
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 16/186 (8%)
Frame = +3
Query: 96 DDINSHKSKFSGDKRAVPNFVGWFWDDSDQDDLHKIALKALKEIISLEDVQRQLKKNIT- 272
DD+ K K +K +P + GWF + L K L+E+ + + +++L+ I+
Sbjct: 171 DDLK--KLKPGLEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISG 228
Query: 273 -----RKDLIDYWIKQKKR-LHVTAMYI--GKKLTNETFPYLENVSKMFKTTTKVKVSGF 428
+ +L+ Y+ K+ LH T + GK E + E V + + K+ +S
Sbjct: 229 DEPKEKLELVSYFGKRPPGVLHCTTKFCDYGKAAGAEEYAQQEVVKRSYGKAFKLSISAL 288
Query: 429 LLTPRTFSGHVVLPED--TKWMFDPDKSNEFQLLP-----HVTERVAPGISPVQSGIDQL 587
+TP+T VVL + W D DK + + LP HVT A + PVQ+G+D L
Sbjct: 289 FVTPKTAGAQVVLTDQELQLWPSDLDKPSASEGLPPGSRAHVTLGCAADVQPVQTGLDLL 348
Query: 588 PVQKMI 605
+ + +
Sbjct: 349 DILQQV 354
>sp|P09543|CN37_HUMAN 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
Length = 421
Score = 54.7 bits (130), Expect = 3e-07
Identities = 52/215 (24%), Positives = 93/215 (43%), Gaps = 16/215 (7%)
Frame = +3
Query: 96 DDINSHKSKFSGDKRAVPNFVGWFWDDSDQDDLHKIALKALKEIISLEDVQRQLKKNIT- 272
DD+ K K +K +P + GWF + L K L+E+ + + +++L++ +
Sbjct: 172 DDLK--KLKPGLEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRQFVPG 229
Query: 273 -----RKDLIDYWIKQKKR-LHVTAMYI--GKKLTNETFPYLENVSKMFKTTTKVKVSGF 428
+ DL+ Y+ K+ LH T + GK E + + + K + + +S
Sbjct: 230 DEpreKMDLVTYFGKRPPGVLHCTTKFCDYGKAPGAEEYAQQDVLKKSYSKAFTLTISAL 289
Query: 429 LLTPRTFSGHVVLPEDTK--WMFDPDKSNEFQLLP-----HVTERVAPGISPVQSGIDQL 587
+TP+T V L E W D DK + LP H+T A + VQ+G+D L
Sbjct: 290 FVTPKTTGARVELSEQQLQLWPSDVDKLSPTDNLPRGSRAHITLGCAADVEAVQTGLDLL 349
Query: 588 PVQKMIVEMKLPKQEFSISLGLVQDWGNCQFYLVL 692
+ + ++ +S G + GN ++ L L
Sbjct: 350 EILRQEKGGSRGEEVGELSRGKLYSLGNGRWMLTL 384
>sp|P06623|CN37_BOVIN 2',3'-cyclic-nucleotide 3'-phosphodiesterase (CNP) (CNPase)
Length = 400
Score = 48.5 bits (114), Expect = 2e-05
Identities = 52/215 (24%), Positives = 92/215 (42%), Gaps = 16/215 (7%)
Frame = +3
Query: 96 DDINSHKSKFSGDKRAVPNFVGWFWDDSDQDDLHKIALKALKEIISLEDVQRQLKKNIT- 272
DD+ K K +K +P + GWF L K L+E+ + + +++L+ ++
Sbjct: 151 DDLK--KLKPGLEKDFLPLYFGWFLTKKSSAALWKTGQTFLEELGNHKAFKKELRHFVSG 208
Query: 273 -----RKDLIDYWIKQKKR-LHVTAMYI--GKKLTNETFPYLENVSKMFKTTTKVKVSGF 428
+ +L+ Y+ K+ LH T + GK E + + V K + + +S
Sbjct: 209 DEpreKIELVTYFGKRPPGVLHCTTKFCDYGKAAGAEEYAQQDVVKKSYCKAFTLTISAL 268
Query: 429 LLTPRTFSGHVVLPED--TKWMFDPDKSNEFQLLP-----HVTERVAPGISPVQSGIDQL 587
+TP+T V L E W D DK + LP H+T A + VQ+GID L
Sbjct: 269 FVTPKTTGARVELSEQQLALWPNDVDKLSPSDNLPRGSRAHITLGCAGDVEAVQTGIDLL 328
Query: 588 PVQKMIVEMKLPKQEFSISLGLVQDWGNCQFYLVL 692
+ + ++ +S G + G+ ++ L L
Sbjct: 329 EIVRQEKGGSRGEEVGELSRGKLYSLGSGRWMLSL 363
>sp|Q4JBP0|SYL1_SULAC Leucyl-tRNA synthetase 1 (Leucine--tRNA ligase 1) (LeuRS 1)
Length = 942
Score = 36.6 bits (83), Expect = 0.075
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +3
Query: 75 EHIEDQIDDINSHKSKFSGDKRAVPNFVGWFWDDSDQDDLHKIALKALKEIISLEDVQRQ 254
E++ ID INS KSK S + V +V +D+ Q DL + A+++LKE SL D +++
Sbjct: 805 EYLRYTIDLINSMKSKMSKEPETVIIYVN---EDNTQRDLIRKAIESLKERKSLPDFEKE 861
Query: 255 L 257
+
Sbjct: 862 V 862
>sp|Q8BJQ9|CGAT1_MOUSE Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 1
(beta4GalNAcT-1)
Length = 530
Score = 34.7 bits (78), Expect = 0.29
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +3
Query: 297 IKQKKRLHVTAMYIGKKLTNETFPYLENVSKM--FKTTTKVKVSG 425
I+Q R+H+T +Y GK+ NE LEN SK F+ T ++++G
Sbjct: 286 IQQDGRVHLTVVYFGKEEMNEVKGILENTSKAANFRNFTFIQLNG 330
>sp|Q8TDX6|CGAT1_HUMAN Chondroitin beta-1,4-N-acetylgalactosaminyltransferase 1
(beta4GalNAcT-1)
Length = 532
Score = 34.7 bits (78), Expect = 0.29
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +3
Query: 297 IKQKKRLHVTAMYIGKKLTNETFPYLENVSKM--FKTTTKVKVSG 425
I+Q R+H+T +Y GK+ NE LEN SK F+ T ++++G
Sbjct: 288 IEQDGRVHLTVVYFGKEEINEVKGILENTSKAANFRNFTFIQLNG 332
>sp|P42125|D3D2_MOUSE 3,2-trans-enoyl-CoA isomerase, mitochondrial precursor
(Dodecenoyl-CoA isomerase) (Delta(3),delta(2)-enoyl-CoA
isomerase) (D3,D2-enoyl-CoA isomerase)
Length = 289
Score = 32.0 bits (71), Expect = 1.9
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 183 QDDLHKIALKALKEIISLEDVQRQLKKNITRKDLIDYWIKQKK 311
+D +H A + + +++ D RQL KN+ RK D IKQ++
Sbjct: 216 EDQVHSKARSVMTKWLAIPDHSRQLTKNMMRKATADNLIKQRE 258
>sp|P47029|YJI4_YEAST Hypothetical 117.2 kDa protein in EXO70-ARP4 intergenic region
Length = 1046
Score = 31.2 bits (69), Expect = 3.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 582 DQYLTEQDLYPELLSLSHGATVEIHSIYRGQTSIWYPL 469
D +L D Y +LL S T++I + Y +S W+PL
Sbjct: 923 DSFLRPNDSYVDLLEPSVDTTIDITAPYARNSSAWHPL 960
>sp|P23729|IF3T_TORCA Type III intermediate filament
Length = 458
Score = 30.8 bits (68), Expect = 4.1
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 57 GNVYNQE--HIEDQIDDINSHKSKFSGDKRAVPNFVGWFWDDSDQDDLHKIALKALKEII 230
G++Y QE + QID I++ KS+ ++ D+ DDL K+ K E+I
Sbjct: 141 GDLYEQELRELRLQIDQISNEKSRVEVER------------DNLADDLQKLREKLQDEVI 188
Query: 231 SLEDVQRQL 257
ED + L
Sbjct: 189 QREDAENNL 197
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,536,419
Number of Sequences: 369166
Number of extensions: 1864064
Number of successful extensions: 5214
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5209
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)