Planaria EST Database

DrC_00159

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00159
         (702 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P13824|ARP2_PLAFA  Clustered-asparagine-rich protein (CARP)     38   0.030
sp|Q35905|RMAR_SACDO  Mitochondrial ribosomal protein VAR1         35   0.19 
sp|P13485|TAGF_BACSU  CDP-glycerol:poly(glycerophosphate) gl...    35   0.25 
sp|O43952|TGP1_TETTH  G-quartet DNA binding protein TGP1           35   0.25 
sp|P09145|HMEN_DROVI  Segmentation polarity homeobox protein...    32   1.6  
sp|P02836|HMEN_DROME  Segmentation polarity homeobox protein...    32   1.6  
sp|P04931|ARP_PLAFA  Asparagine-rich protein (AG319) (ARP)         31   2.8  
sp|Q03656|SKY1_YEAST  Serine/threonine-protein kinase SKY1 (...    30   4.7  
sp|Q02455|MLP1_YEAST  Protein MLP1 (Myosin-like protein 1)         30   6.2  
sp|P14196|AAC2_DICDI  AAC-rich mRNA clone AAC11 protein            30   6.2  

>sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP)
          Length = 443

 Score = 37.7 bits (86), Expect = 0.030
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = +1

Query: 43  NSFRNNKPNFIKKNLSITEKRQDVRNRLLKNKQMNISNRINTPNNQKTRNPNFPRQNRFL 222
           N + NN  N    N + T  + +  NR +KNK MN +N  N  NN    N NF    +  
Sbjct: 159 NFYNNNSSN--NNNNNQTNTQNNFMNRNMKNKNMNNNNNNNNSNNNMMMNMNFNNNQQMN 216

Query: 223 N 225
           N
Sbjct: 217 N 217


 Score = 29.6 bits (65), Expect = 8.1
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
 Frame = +1

Query: 1   NKNALARNVVKKARNSFRNNKPNFIK--KNLSITEKRQDVRNRLLKNKQMNISNRINTPN 174
           N   +  N +    N   NN  N+    KN++   +  ++    L N   NI+N  N  N
Sbjct: 211 NNQQMNNNPMLNQNNFMLNNNNNYNNNAKNVNDMYRDGEMSPNHLNNNNNNINNNNNNNN 270

Query: 175 NQKTRNPNFPRQN 213
           N    N    RQN
Sbjct: 271 NNNNNNNVMFRQN 283

>sp|Q35905|RMAR_SACDO Mitochondrial ribosomal protein VAR1
          Length = 373

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
 Frame = +1

Query: 22  NVVKKARNSFRNNKPN--FIKKN--LSITEKRQDVRNRLLKNKQMNISNR---INTPNNQ 180
           +++ K  N+  NN  N   + KN  L +  KR +    +LKN  MNI+N+   +N  NN 
Sbjct: 11  SMMNKTNNNNNNNINNKKLLLKNMLLDMNNKRMNNMKTMLKNNNMNINNKLQHLNNMNNW 70

Query: 181 KTRNPNFPRQNRFLN 225
            T+  N+ +    +N
Sbjct: 71  NTQIYNYNKNMEIMN 85

>sp|P13485|TAGF_BACSU CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
           (Polyglycerol phosphate polymerase) (CGPTase) (Major
           teichoic acid biosynthesis protein F)
          Length = 746

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 22/82 (26%), Positives = 34/82 (41%)
 Frame = +1

Query: 412 RNQSSNFPGSGRRPLERTDNQFSRRNGSGPIYRNPMLSRDREYEAMARALIEAHRENRYS 591
           +   S F  + R P++R    F   NG             ++Y    RA+ E  REN   
Sbjct: 365 KTYKSLFMMASRMPVKRKTVIFESFNG-------------KQYSCNPRAIYEYMRENHPE 411

Query: 592 SNQIASFQRRYNAPMENRGYPY 657
                S  ++Y+AP + +G PY
Sbjct: 412 YKMYWSVNKQYSAPFDEKGIPY 433

>sp|O43952|TGP1_TETTH G-quartet DNA binding protein TGP1
          Length = 725

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 22  NVVKKARNSFRNNKPNFIKKNLSITEKRQD-VRNRLLKNKQMNISNRINTPNNQKTRNPN 198
           N   + R+  +N +P     N    E R +  RN   +N      +R+N  NNQ+ RN +
Sbjct: 529 NNKNQQRSQSQNQRPPRNYDNRQGGENRNNRQRNENNRNNFNGNGHRVNNQNNQRNRNSS 588

Query: 199 FPRQNRF 219
           +PR N +
Sbjct: 589 YPRNNNY 595

>sp|P09145|HMEN_DROVI Segmentation polarity homeobox protein engrailed
          Length = 584

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = +1

Query: 472 QFSRRNGSGPIYRNPMLSRDREYEAMARALIEAHRENRYSSNQIASFQRRYNAPMENRGY 651
           ++S R  SGP YR P   +D+  +       E      +SS Q+A  +R +N   ENR  
Sbjct: 462 RYSDRPSSGPRYRRPKQPKDKTND-------EKRPRTAFSSEQLARLKREFN---ENRYL 511

Query: 652 PYRR 663
             RR
Sbjct: 512 TERR 515

>sp|P02836|HMEN_DROME Segmentation polarity homeobox protein engrailed
          Length = 552

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = +1

Query: 472 QFSRRNGSGPIYRNPMLSRDREYEAMARALIEAHRENRYSSNQIASFQRRYNAPMENRGY 651
           ++S R  SGP YR P   +D+  +       E      +SS Q+A  +R +N   ENR  
Sbjct: 430 RYSDRPSSGPRYRRPKQPKDKTND-------EKRPRTAFSSEQLARLKREFN---ENRYL 479

Query: 652 PYRR 663
             RR
Sbjct: 480 TERR 483

>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
          Length = 537

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 20/66 (30%), Positives = 25/66 (37%)
 Frame = +1

Query: 1   NKNALARNVVKKARNSFRNNKPNFIKKNLSITEKRQDVRNRLLKNKQMNISNRINTPNNQ 180
           N N    N +   RN   NN  N     +   +K Q+  N    N   N  NR N+ NN 
Sbjct: 213 NNNMNRNNSINIKRNLNNNNNINNNMNKMGSQDKNQNSNNNFYMN--YNYQNRKNSMNNN 270

Query: 181 KTRNPN 198
              N N
Sbjct: 271 MNNNMN 276

>sp|Q03656|SKY1_YEAST Serine/threonine-protein kinase SKY1 (SRPK)
          Length = 742

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 1   NKNALARNV-VKKARNSFRNNKPNFIKKNLSITEKRQDVRNRLLKNKQMNISNRINTPNN 177
           N N++   + +K + NSF N+ P+ + + + I E   D  N      + N +N  N  NN
Sbjct: 429 NNNSINNGIGIKNSNNSFLNSVPHSVTR-MFINEDSNDNNNNDNSKNKNNNNNNSNNNNN 487

Query: 178 QKTRN 192
           +   N
Sbjct: 488 EDIMN 492

>sp|Q02455|MLP1_YEAST Protein MLP1 (Myosin-like protein 1)
          Length = 1875

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +1

Query: 22   NVVKKARNSFRNNKPNFIKKNLSITEKRQDVRNRLLKNKQMNISNRINTPNN 177
            N+V+  + SF  +K  FIK      EK Q+V  ++L+ ++     R+N P+N
Sbjct: 1459 NIVESMKKSFEEDKIKFIK------EKTQEVNEKILEAQE-----RLNQPSN 1499

>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
          Length = 448

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 20/76 (26%), Positives = 28/76 (36%)
 Frame = +1

Query: 1   NKNALARNVVKKARNSFRNNKPNFIKKNLSITEKRQDVRNRLLKNKQMNISNRINTPNNQ 180
           N N  + N      N+  NN  N    N++      +  N    N+  N +N  N  NN 
Sbjct: 304 NNNNNSTNNNTNNNNNNTNNNTNNNNNNINNNNNNTNNNNNNANNQNTNNNNMGNNSNNN 363

Query: 181 KTRNPNFPRQNRFLNT 228
              N N  + N   NT
Sbjct: 364 NNPNNNNHQNNNNNNT 379

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,630,909
Number of Sequences: 369166
Number of extensions: 1220592
Number of successful extensions: 3367
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3351
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00159

  1. Dr_sW_004_O16
  2. Dr_sW_002_I19