Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_O16
(702 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP) 38 0.030
sp|Q35905|RMAR_SACDO Mitochondrial ribosomal protein VAR1 35 0.19
sp|P13485|TAGF_BACSU CDP-glycerol:poly(glycerophosphate) gl... 35 0.25
sp|O43952|TGP1_TETTH G-quartet DNA binding protein TGP1 35 0.25
sp|P09145|HMEN_DROVI Segmentation polarity homeobox protein... 32 1.6
sp|P02836|HMEN_DROME Segmentation polarity homeobox protein... 32 1.6
sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP) 31 2.8
sp|Q03656|SKY1_YEAST Serine/threonine-protein kinase SKY1 (... 30 4.7
sp|Q02455|MLP1_YEAST Protein MLP1 (Myosin-like protein 1) 30 6.2
sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein 30 6.2
>sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP)
Length = 443
Score = 37.7 bits (86), Expect = 0.030
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +1
Query: 43 NSFRNNKPNFIKKNLSITEKRQDVRNRLLKNKQMNISNRINTPNNQKTRNPNFPRQNRFL 222
N + NN N N + T + + NR +KNK MN +N N NN N NF +
Sbjct: 159 NFYNNNSSN--NNNNNQTNTQNNFMNRNMKNKNMNNNNNNNNSNNNMMMNMNFNNNQQMN 216
Query: 223 N 225
N
Sbjct: 217 N 217
Score = 29.6 bits (65), Expect = 8.1
Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Frame = +1
Query: 1 NKNALARNVVKKARNSFRNNKPNFIK--KNLSITEKRQDVRNRLLKNKQMNISNRINTPN 174
N + N + N NN N+ KN++ + ++ L N NI+N N N
Sbjct: 211 NNQQMNNNPMLNQNNFMLNNNNNYNNNAKNVNDMYRDGEMSPNHLNNNNNNINNNNNNNN 270
Query: 175 NQKTRNPNFPRQN 213
N N RQN
Sbjct: 271 NNNNNNNVMFRQN 283
>sp|Q35905|RMAR_SACDO Mitochondrial ribosomal protein VAR1
Length = 373
Score = 35.0 bits (79), Expect = 0.19
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Frame = +1
Query: 22 NVVKKARNSFRNNKPN--FIKKN--LSITEKRQDVRNRLLKNKQMNISNR---INTPNNQ 180
+++ K N+ NN N + KN L + KR + +LKN MNI+N+ +N NN
Sbjct: 11 SMMNKTNNNNNNNINNKKLLLKNMLLDMNNKRMNNMKTMLKNNNMNINNKLQHLNNMNNW 70
Query: 181 KTRNPNFPRQNRFLN 225
T+ N+ + +N
Sbjct: 71 NTQIYNYNKNMEIMN 85
>sp|P13485|TAGF_BACSU CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
(Polyglycerol phosphate polymerase) (CGPTase) (Major
teichoic acid biosynthesis protein F)
Length = 746
Score = 34.7 bits (78), Expect = 0.25
Identities = 22/82 (26%), Positives = 34/82 (41%)
Frame = +1
Query: 412 RNQSSNFPGSGRRPLERTDNQFSRRNGSGPIYRNPMLSRDREYEAMARALIEAHRENRYS 591
+ S F + R P++R F NG ++Y RA+ E REN
Sbjct: 365 KTYKSLFMMASRMPVKRKTVIFESFNG-------------KQYSCNPRAIYEYMRENHPE 411
Query: 592 SNQIASFQRRYNAPMENRGYPY 657
S ++Y+AP + +G PY
Sbjct: 412 YKMYWSVNKQYSAPFDEKGIPY 433
>sp|O43952|TGP1_TETTH G-quartet DNA binding protein TGP1
Length = 725
Score = 34.7 bits (78), Expect = 0.25
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 22 NVVKKARNSFRNNKPNFIKKNLSITEKRQD-VRNRLLKNKQMNISNRINTPNNQKTRNPN 198
N + R+ +N +P N E R + RN +N +R+N NNQ+ RN +
Sbjct: 529 NNKNQQRSQSQNQRPPRNYDNRQGGENRNNRQRNENNRNNFNGNGHRVNNQNNQRNRNSS 588
Query: 199 FPRQNRF 219
+PR N +
Sbjct: 589 YPRNNNY 595
>sp|P09145|HMEN_DROVI Segmentation polarity homeobox protein engrailed
Length = 584
Score = 32.0 bits (71), Expect = 1.6
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +1
Query: 472 QFSRRNGSGPIYRNPMLSRDREYEAMARALIEAHRENRYSSNQIASFQRRYNAPMENRGY 651
++S R SGP YR P +D+ + E +SS Q+A +R +N ENR
Sbjct: 462 RYSDRPSSGPRYRRPKQPKDKTND-------EKRPRTAFSSEQLARLKREFN---ENRYL 511
Query: 652 PYRR 663
RR
Sbjct: 512 TERR 515
>sp|P02836|HMEN_DROME Segmentation polarity homeobox protein engrailed
Length = 552
Score = 32.0 bits (71), Expect = 1.6
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +1
Query: 472 QFSRRNGSGPIYRNPMLSRDREYEAMARALIEAHRENRYSSNQIASFQRRYNAPMENRGY 651
++S R SGP YR P +D+ + E +SS Q+A +R +N ENR
Sbjct: 430 RYSDRPSSGPRYRRPKQPKDKTND-------EKRPRTAFSSEQLARLKREFN---ENRYL 479
Query: 652 PYRR 663
RR
Sbjct: 480 TERR 483
>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
Length = 537
Score = 31.2 bits (69), Expect = 2.8
Identities = 20/66 (30%), Positives = 25/66 (37%)
Frame = +1
Query: 1 NKNALARNVVKKARNSFRNNKPNFIKKNLSITEKRQDVRNRLLKNKQMNISNRINTPNNQ 180
N N N + RN NN N + +K Q+ N N N NR N+ NN
Sbjct: 213 NNNMNRNNSINIKRNLNNNNNINNNMNKMGSQDKNQNSNNNFYMN--YNYQNRKNSMNNN 270
Query: 181 KTRNPN 198
N N
Sbjct: 271 MNNNMN 276
>sp|Q03656|SKY1_YEAST Serine/threonine-protein kinase SKY1 (SRPK)
Length = 742
Score = 30.4 bits (67), Expect = 4.7
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 1 NKNALARNV-VKKARNSFRNNKPNFIKKNLSITEKRQDVRNRLLKNKQMNISNRINTPNN 177
N N++ + +K + NSF N+ P+ + + + I E D N + N +N N NN
Sbjct: 429 NNNSINNGIGIKNSNNSFLNSVPHSVTR-MFINEDSNDNNNNDNSKNKNNNNNNSNNNNN 487
Query: 178 QKTRN 192
+ N
Sbjct: 488 EDIMN 492
>sp|Q02455|MLP1_YEAST Protein MLP1 (Myosin-like protein 1)
Length = 1875
Score = 30.0 bits (66), Expect = 6.2
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 22 NVVKKARNSFRNNKPNFIKKNLSITEKRQDVRNRLLKNKQMNISNRINTPNN 177
N+V+ + SF +K FIK EK Q+V ++L+ ++ R+N P+N
Sbjct: 1459 NIVESMKKSFEEDKIKFIK------EKTQEVNEKILEAQE-----RLNQPSN 1499
>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
Length = 448
Score = 30.0 bits (66), Expect = 6.2
Identities = 20/76 (26%), Positives = 28/76 (36%)
Frame = +1
Query: 1 NKNALARNVVKKARNSFRNNKPNFIKKNLSITEKRQDVRNRLLKNKQMNISNRINTPNNQ 180
N N + N N+ NN N N++ + N N+ N +N N NN
Sbjct: 304 NNNNNSTNNNTNNNNNNTNNNTNNNNNNINNNNNNTNNNNNNANNQNTNNNNMGNNSNNN 363
Query: 181 KTRNPNFPRQNRFLNT 228
N N + N NT
Sbjct: 364 NNPNNNNHQNNNNNNT 379
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,630,909
Number of Sequences: 369166
Number of extensions: 1220592
Number of successful extensions: 3367
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3351
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)