Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_I19
(494 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13485|TAGF_BACSU CDP-glycerol:poly(glycerophosphate) gl... 35 0.13
sp|P09145|HMEN_DROVI Segmentation polarity homeobox protein... 32 0.82
sp|P02836|HMEN_DROME Segmentation polarity homeobox protein... 32 0.82
sp|P34486|YMJA_CAEEL Hypothetical protein F59B2.11 in chrom... 29 6.9
sp|Q9VKM1|PIWI_DROME Piwi protein 29 6.9
sp|Q14185|DOCK1_HUMAN Dedicator of cytokinesis protein 1 (1... 28 9.0
sp|Q9V105|Y624_PYRAB Hypothetical UPF0211 protein PYRAB06240 28 9.0
>sp|P13485|TAGF_BACSU CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase
(Polyglycerol phosphate polymerase) (CGPTase) (Major
teichoic acid biosynthesis protein F)
Length = 746
Score = 34.7 bits (78), Expect = 0.13
Identities = 22/82 (26%), Positives = 34/82 (41%)
Frame = +3
Query: 204 RNQSSNFPGSGRRPLERTDNQFSRRNGSGPIYRNPMLSRDREYEAMARALIEAHRENRYS 383
+ S F + R P++R F NG ++Y RA+ E REN
Sbjct: 365 KTYKSLFMMASRMPVKRKTVIFESFNG-------------KQYSCNPRAIYEYMRENHPE 411
Query: 384 SNQIASFQRRYNAPMENRGYPY 449
S ++Y+AP + +G PY
Sbjct: 412 YKMYWSVNKQYSAPFDEKGIPY 433
>sp|P09145|HMEN_DROVI Segmentation polarity homeobox protein engrailed
Length = 584
Score = 32.0 bits (71), Expect = 0.82
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 264 QFSRRNGSGPIYRNPMLSRDREYEAMARALIEAHRENRYSSNQIASFQRRYNAPMENRGY 443
++S R SGP YR P +D+ + E +SS Q+A +R +N ENR
Sbjct: 462 RYSDRPSSGPRYRRPKQPKDKTND-------EKRPRTAFSSEQLARLKREFN---ENRYL 511
Query: 444 PYRR 455
RR
Sbjct: 512 TERR 515
>sp|P02836|HMEN_DROME Segmentation polarity homeobox protein engrailed
Length = 552
Score = 32.0 bits (71), Expect = 0.82
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +3
Query: 264 QFSRRNGSGPIYRNPMLSRDREYEAMARALIEAHRENRYSSNQIASFQRRYNAPMENRGY 443
++S R SGP YR P +D+ + E +SS Q+A +R +N ENR
Sbjct: 430 RYSDRPSSGPRYRRPKQPKDKTND-------EKRPRTAFSSEQLARLKREFN---ENRYL 479
Query: 444 PYRR 455
RR
Sbjct: 480 TERR 483
>sp|P34486|YMJA_CAEEL Hypothetical protein F59B2.11 in chromosome III precursor
Length = 590
Score = 28.9 bits (63), Expect = 6.9
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 207 NQSSNFPGSGRRPLERTDNQFSRRNGSGPIYRNPMLSRDREYEAMARALIEAHREN 374
N+SSN GRR +++T N + N I + LS D E + +++ HR N
Sbjct: 396 NESSNEETEGRRSVKKT-NTLNEDNNGNSIRKESNLSNDEETD----EVVDTHRIN 446
>sp|Q9VKM1|PIWI_DROME Piwi protein
Length = 843
Score = 28.9 bits (63), Expect = 6.9
Identities = 22/67 (32%), Positives = 28/67 (41%)
Frame = +3
Query: 237 RRPLERTDNQFSRRNGSGPIYRNPMLSRDREYEAMARALIEAHRENRYSSNQIASFQRRY 416
RRPL D+ SR +G GP R + + A IEA RE R + RR
Sbjct: 10 RRPLNEDDSSTSRGSGDGP--RVKVFRGSSSGDPRADPRIEASRERR----ALEEAPRRE 63
Query: 417 NAPMENR 437
P E +
Sbjct: 64 GGPTERK 70
>sp|Q14185|DOCK1_HUMAN Dedicator of cytokinesis protein 1 (180 kDa protein downstream of
CRK) (DOCK180)
Length = 1865
Score = 28.5 bits (62), Expect = 9.0
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 193 TIVVETKVVISPEVVGVRWKELIINFLVEMAVVQFTEIQCFREIENMKLWLGH 351
TIV + K+V P+ + + E I+N V M ++ ++ C EI + L+ H
Sbjct: 803 TIVNDVKLVFDPKELSKMFTEFILN--VPMGLLTIQKLYCLIEIVHSDLFTQH 853
>sp|Q9V105|Y624_PYRAB Hypothetical UPF0211 protein PYRAB06240
Length = 142
Score = 28.5 bits (62), Expect = 9.0
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 202 VETKVVISPEVVGVRWKELIINFLVEMAVVQFTEIQCFREIE 327
VE K V EV G + L+ NFL E+ V+ E FR+ E
Sbjct: 43 VEKKEVREVEVEGEDLESLLYNFLEELLVIHDIEGLVFRDFE 84
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,906,044
Number of Sequences: 369166
Number of extensions: 846887
Number of successful extensions: 2114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2113
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3069744620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)