Planaria EST Database

DrC_00157

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00157
         (703 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O95214|LERL1_HUMAN  Leptin receptor overlapping transcrip...   137   2e-32
sp|O89013|OBRG_MOUSE  Leptin receptor gene-related protein (...   137   4e-32
sp|O15243|OBRG_HUMAN  Leptin receptor gene-related protein (...   137   4e-32
sp|Q9CQ74|LERL1_MOUSE  Leptin receptor overlapping transcrip...   135   8e-32
sp|Q9JLS8|OBRG_RAT  Leptin receptor gene-related protein (OB...   135   1e-31
sp|Q18319|YTO2_CAEEL  Hypothetical protein C30B5.2 in chromo...   100   5e-21
sp|P47111|VPS55_YEAST  Vacuolar protein sorting protein 55         61   3e-09
sp|P03893|NU2M_MOUSE  NADH-ubiquinone oxidoreductase chain 2...    36   0.086
sp|P0AA93|YPDA_ECOLI  Inner membrane protein ypdA                  33   0.73 
sp|Q96061|NU2M_RHIUN  NADH-ubiquinone oxidoreductase chain 2...    32   2.1  

>sp|O95214|LERL1_HUMAN Leptin receptor overlapping transcript-like 1
          Length = 131

 Score =  137 bits (346), Expect = 2e-32
 Identities = 71/135 (52%), Positives = 96/135 (71%), Gaps = 2/135 (1%)
 Frame = +3

Query: 36  MAQLKALIGLAFLASLGVTFLILACALEQYNKWWPLFVLLFHFLSPVPCLIAKKYSDSSE 215
           MA +KALI L+F  ++G+ FL+L CAL  YNK+WPLFVL F+ LSP+P  IA++  D ++
Sbjct: 1   MAGIKALISLSFGGAIGLMFLMLGCALPIYNKYWPLFVLFFYILSPIPYCIARRLVDDTD 60

Query: 216 --SSTLWDNCIFITSIIVVSGYGLPIVLAVAPLTGPIIKWGACFLVMASNTVIFSTILGF 389
             S+   +  IF+T+ IVVS +GLPIV A A L    I+WGAC LV+  NTVIF+TILGF
Sbjct: 61  AMSNACKELAIFLTTGIVVSAFGLPIVFARAHL----IEWGACALVLTGNTVIFATILGF 116

Query: 390 FCLFGRENEFSYSGW 434
           F +FG  ++FS+  W
Sbjct: 117 FLVFGSNDDFSWQQW 131

>sp|O89013|OBRG_MOUSE Leptin receptor gene-related protein (OB-R gene related protein)
           (OB-RGRP)
          Length = 131

 Score =  137 bits (344), Expect = 4e-32
 Identities = 69/135 (51%), Positives = 93/135 (68%), Gaps = 2/135 (1%)
 Frame = +3

Query: 36  MAQLKALIGLAFLASLGVTFLILACALEQYNKWWPLFVLLFHFLSPVPCLIAKK--YSDS 209
           MA +KAL+ L+F  ++G+TFL+L CALE Y  +WPLFVL+F+ +SP+P  IAK+  Y   
Sbjct: 1   MAGVKALVALSFSGAIGLTFLMLGCALEDYGVYWPLFVLIFYVISPIPYFIAKRVTYDSD 60

Query: 210 SESSTLWDNCIFITSIIVVSGYGLPIVLAVAPLTGPIIKWGACFLVMASNTVIFSTILGF 389
           + SS   +   F T+ IVVS +GLP+VLA       +IKWGAC LV+A N VIF TI GF
Sbjct: 61  ATSSACRELAYFFTTGIVVSAFGLPVVLARV----DVIKWGACGLVLAGNAVIFLTIQGF 116

Query: 390 FCLFGRENEFSYSGW 434
           F +FGR ++FS+  W
Sbjct: 117 FLVFGRGDDFSWEQW 131

>sp|O15243|OBRG_HUMAN Leptin receptor gene-related protein (OB-R gene related protein)
           (OB-RGRP) (Leptin receptor overlapping transcript
           protein)
          Length = 131

 Score =  137 bits (344), Expect = 4e-32
 Identities = 68/135 (50%), Positives = 92/135 (68%), Gaps = 2/135 (1%)
 Frame = +3

Query: 36  MAQLKALIGLAFLASLGVTFLILACALEQYNKWWPLFVLLFHFLSPVPCLIAKK--YSDS 209
           MA +KAL+ L+F  ++G+TFL+L CALE Y  +WPLFVL+FH +SP+P  IAK+  Y   
Sbjct: 1   MAGVKALVALSFSGAIGLTFLMLGCALEDYGVYWPLFVLIFHAISPIPHFIAKRVTYDSD 60

Query: 210 SESSTLWDNCIFITSIIVVSGYGLPIVLAVAPLTGPIIKWGACFLVMASNTVIFSTILGF 389
           + SS   +   F T+ IVVS +G P++LA       +IKWGAC LV+A N VIF TI GF
Sbjct: 61  ATSSACRELAYFFTTGIVVSAFGFPVILARV----AVIKWGACGLVLAGNAVIFLTIQGF 116

Query: 390 FCLFGRENEFSYSGW 434
           F +FGR ++FS+  W
Sbjct: 117 FLIFGRGDDFSWEQW 131

>sp|Q9CQ74|LERL1_MOUSE Leptin receptor overlapping transcript-like 1
          Length = 131

 Score =  135 bits (341), Expect = 8e-32
 Identities = 69/135 (51%), Positives = 96/135 (71%), Gaps = 2/135 (1%)
 Frame = +3

Query: 36  MAQLKALIGLAFLASLGVTFLILACALEQYNKWWPLFVLLFHFLSPVPCLIAKKYSDSSE 215
           MA +KALI L+F  ++G+ FL+L CAL  YN++WPLFVL F+ LSP+P  IA++  D ++
Sbjct: 1   MAGIKALISLSFGGAIGLMFLMLGCALPIYNQYWPLFVLFFYILSPIPYCIARRLVDDTD 60

Query: 216 --SSTLWDNCIFITSIIVVSGYGLPIVLAVAPLTGPIIKWGACFLVMASNTVIFSTILGF 389
             S+   +  IF+T+ IVVS +GLP+V A A L    I+WGAC LV+  NTVIF+TILGF
Sbjct: 61  AMSNACKELAIFLTTGIVVSAFGLPVVFARAHL----IEWGACALVLTGNTVIFATILGF 116

Query: 390 FCLFGRENEFSYSGW 434
           F +FG  ++FS+  W
Sbjct: 117 FLVFGSNDDFSWQQW 131

>sp|Q9JLS8|OBRG_RAT Leptin receptor gene-related protein (OB-R gene related protein)
           (OB-RGRP)
          Length = 131

 Score =  135 bits (339), Expect = 1e-31
 Identities = 67/135 (49%), Positives = 92/135 (68%), Gaps = 2/135 (1%)
 Frame = +3

Query: 36  MAQLKALIGLAFLASLGVTFLILACALEQYNKWWPLFVLLFHFLSPVPCLIAKK--YSDS 209
           MA +KAL+ L+F  ++G+TFL+L CALE Y  +WPLFVL+F+ +SP+P  IAK+  Y   
Sbjct: 1   MAGVKALVALSFSGAIGLTFLMLGCALEDYGVYWPLFVLIFYVISPIPYFIAKRVTYDSD 60

Query: 210 SESSTLWDNCIFITSIIVVSGYGLPIVLAVAPLTGPIIKWGACFLVMASNTVIFSTILGF 389
           + SS   +   F T+ IVVS +G P++LA       +IKWGAC LV+A N VIF TI GF
Sbjct: 61  ATSSACRELAYFFTTGIVVSAFGFPVILARV----AVIKWGACGLVLAGNAVIFLTIQGF 116

Query: 390 FCLFGRENEFSYSGW 434
           F +FGR ++FS+  W
Sbjct: 117 FLVFGRGDDFSWEQW 131

>sp|Q18319|YTO2_CAEEL Hypothetical protein C30B5.2 in chromosome II
          Length = 132

 Score =  100 bits (248), Expect = 5e-21
 Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
 Frame = +3

Query: 36  MAQLKALIGLAFLASLGVTFLILACALEQYNKWWPLFVLLFHFLSPVPCLIAKKY-SDSS 212
           M  ++A+  LAF   +G+TFL+L CAL +Y  W P+FV+ F+ LSPVP LIA+++  D +
Sbjct: 1   MGGVRAVAALAFAGVVGLTFLVLGCALPRYGTWTPMFVITFYVLSPVPLLIARRFQEDMT 60

Query: 213 ESSTLWDNCIFITSIIVVSGYGLPIVLAVAPLTGPIIKWGACFLVMASNTVIFSTILGFF 392
            ++   +  +FIT+ IV+S + LPIVLA A   G I    ACFLV   + ++F TI+ +F
Sbjct: 61  GTNACIELALFITTGIVISAFALPIVLAHA---GTIAN-SACFLVNTGSVIMFGTIIAYF 116

Query: 393 CLFGRENEFSYS 428
            L   ++  S+S
Sbjct: 117 YLHRDDDSGSWS 128

>sp|P47111|VPS55_YEAST Vacuolar protein sorting protein 55
          Length = 140

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 8/137 (5%)
 Frame = +3

Query: 24  LFEF-MAQLKALIGLAFLASLGVTFLILACALEQYNKWWPLFVLLFHFLSPVPCLI---A 191
           + EF ++ L  +I L+   +LG   +IL+CAL  ++ ++PLF +L   L+P+P  I    
Sbjct: 1   MMEFKVSPLTKIISLSGFLALGFLLVILSCAL--FHNYYPLFDILIFLLAPIPNTIFNAG 58

Query: 192 KKY--SD--SSESSTLWDNCIFITSIIVVSGYGLPIVLAVAPLTGPIIKWGACFLVMASN 359
            KY  SD  S  S+T  D   F+T ++V SG  LP+V     L G +    +C + M   
Sbjct: 59  NKYHTSDFMSDSSNTGQDLAHFLTGMLVTSGIALPVVFYHCQLIGHL----SCIMCMIGG 114

Query: 360 TVIFSTILGFFCLFGRE 410
            +I+S+I+ F   F ++
Sbjct: 115 LIIYSSIVIFKWFFKKD 131

>sp|P03893|NU2M_MOUSE NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 345

 Score = 36.2 bits (82), Expect = 0.086
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
 Frame = +3

Query: 42  QLKALIGLAFLASLGVTFLILACALEQYNKWWPLFVLLFHFLSPVPCLIAKKYSDS---S 212
           Q++ ++  + +A +G    IL      YN    L  L+ + +   P  +A   ++S   +
Sbjct: 174 QMRKIMAYSSIAHMGWMLAILP-----YNPSLTLLNLMIYIILTAPMFMALMLNNSMTIN 228

Query: 213 ESSTLWDNC---IFITSIIVVSGYGLPIVLAVAPLTGPIIKWGACFLVMASNTVIFSTIL 383
             S LW+     + + S++++S  GLP      PLTG + KW     +M +N +I +T++
Sbjct: 229 SISLLWNKTPAMLTMISLMLLSLGGLP------PLTGFLPKWIIITELMKNNCLIMATLM 282

Query: 384 GFFCL 398
               L
Sbjct: 283 AMMAL 287

>sp|P0AA93|YPDA_ECOLI Inner membrane protein ypdA
          Length = 565

 Score = 33.1 bits (74), Expect = 0.73
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -1

Query: 382 RIVENITVLLAITKKQAPHFMIGPVNGATAKTIGRP*PDTTIMLVINIQ--LSHNVELSD 209
           R + N   L A+  K  PHF+   +N  ++    R  PDT   L+ N+   L +N+EL D
Sbjct: 353 REMANKAELRALQSKINPHFLFNALNAISSSI--RLNPDTARQLIFNLSRYLRYNIELKD 410

Query: 208 ESE 200
           + +
Sbjct: 411 DEQ 413

>sp|Q96061|NU2M_RHIUN NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 347

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
 Frame = +3

Query: 42  QLKALIGLAFLASLGVTFLILACALEQYNKWWPLFVLLFHFLSPVPCLIAKKYSDSSESS 221
           QL+ ++  + +A +G    IL      YN    +  +L + +  +   +    + S+ + 
Sbjct: 174 QLRKIMAYSSIAHMGWMTAILT-----YNPTMTMLNMLIYIMMTLTTFMLLMLNSSTTTL 228

Query: 222 TL---WDNCIFITSIIVV---SGYGLPIVLAVAPLTGPIIKWGACFLVMASNTVIFSTIL 383
           +L   W+    ITS+I++   S  GLP      PL+G I KW     +  +N++I  T +
Sbjct: 229 SLSHTWNKTPLITSLILIIMLSLGGLP------PLSGFIPKWMIIQELTKNNSIILPTSM 282

Query: 384 GFFCL 398
               L
Sbjct: 283 AIMAL 287

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,682,658
Number of Sequences: 369166
Number of extensions: 1537972
Number of successful extensions: 3585
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3572
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00157

  1. Dr_sW_004_N17
  2. Dr_sW_014_D09