Planaria EST Database


DrC_00155

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00155
         (569 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q94261|CSN7_CAEEL  Probable COP9 signalosome complex subu...    94   3e-19
sp|Q9H9Q2|CSN7B_HUMAN  COP9 signalosome complex subunit 7b (...    50   4e-06
sp|Q8BV13|CSN7B_MOUSE  COP9 signalosome complex subunit 7b (...    50   5e-06
sp|Q9UBW8|CSN7A_HUMAN  COP9 signalosome complex subunit 7a (...    49   7e-06
sp|Q94JU3|CSN7_ARATH  COP9 signalosome complex subunit 7 (CS...    49   9e-06
sp|Q9CZ04|CSN7A_MOUSE  COP9 signalosome complex subunit 7a (...    47   4e-05
sp|Q04062|RPN9_YEAST  26S proteasome regulatory subunit RPN9...    45   1e-04
sp|Q6IQT4|CSN2_BRARE  COP9 signalosome complex subunit 2 (Si...    35   0.13 
sp|P61201|CSN2_HUMAN  COP9 signalosome complex subunit 2 (Si...    34   0.22 
sp|Q6IR75|CSN2_XENLA  COP9 signalosome complex subunit 2 (Si...    34   0.22 
>sp|Q94261|CSN7_CAEEL Probable COP9 signalosome complex subunit 7 (Signalosome subunit 7)
          Length = 390

 Score = 93.6 bits (231), Expect = 3e-19
 Identities = 54/163 (33%), Positives = 97/163 (59%), Gaps = 4/163 (2%)
 Frame = +2

Query: 2   VRCIVTALQDPNALTMDQILELKPVQCL--AGEAIHDLLSIFVSGTINDYRKFLDDHPDF 175
           + C+ TA+ DP + + D +  L  V+ L  +   +   L +F+SGT+ DY++F+  +P F
Sbjct: 213 MECVRTAVVDPKSFSFDHLERLSAVKALKTSDPLMFTALELFISGTLKDYKEFVAKNPKF 272

Query: 176 M-EKYELDKEACLTKIRILSLMTLAAGDTTELSYDTIQKELQLERAE-LEAFVIEAVRQQ 349
           + E  ++D+   L KIR+L+LM+LA  +  E+S D + K+L +   E LE FVI+A++  
Sbjct: 273 VTEHLKVDETILLKKIRLLTLMSLAE-EKNEISLDELAKQLDILADETLEEFVIDAIQVN 331

Query: 350 AVTCKLDQQNEKVLISGAVPRSFGPDQWTKLYRDLQMWQNNFK 478
           A++ K+++    +++S    R FG +QW  L + L++   N K
Sbjct: 332 AISGKINEMARTLIVSSYQHRRFGTEQWVLLEKRLKVLIANLK 374
>sp|Q9H9Q2|CSN7B_HUMAN COP9 signalosome complex subunit 7b (Signalosome subunit 7b)
           (SGN7b) (JAB1-containing signalosome subunit 7b)
          Length = 264

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
 Frame = +2

Query: 11  IVTALQDPNALTMDQILELKPVQCLA---GEAIHDLLSIFVSGTINDYRKFLDDHPDFME 181
           I   L+ P      ++LEL  VQ LA     A   LL++F  GT  DY    +  P+   
Sbjct: 31  ISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLNLFAYGTYPDYIANKESLPELST 90

Query: 182 KYELDKEACLTKIRILSLMTLAAGDTTELSYDTIQKELQLERA-ELEAFVIEAVRQQAVT 358
             +        K++ L++++LA+     + Y  + K+L++    ELE  +IEAV    + 
Sbjct: 91  AQQ-------NKLKHLTIVSLASRMKC-IPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQ 142

Query: 359 CKLDQQNEKVLISGAVPRSFGPDQWTKLYRDLQMW 463
            KLDQ+N+ + +   + R         + + L  W
Sbjct: 143 GKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEW 177
>sp|Q8BV13|CSN7B_MOUSE COP9 signalosome complex subunit 7b (Signalosome subunit 7b)
           (SGN7b) (JAB1-containing signalosome subunit 7b)
          Length = 264

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
 Frame = +2

Query: 11  IVTALQDPNALTMDQILELKPVQCLA---GEAIHDLLSIFVSGTINDYRKFLDDHPDFME 181
           I   L+ P      ++LEL  VQ LA     A   LL++F  GT  DY    +  P+   
Sbjct: 31  ISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLNLFAYGTYPDYIANKESLPELSV 90

Query: 182 KYELDKEACLTKIRILSLMTLAAGDTTELSYDTIQKELQLERA-ELEAFVIEAVRQQAVT 358
             +        K++ L++++LA+     + Y  + K+L++    ELE  +IEAV    + 
Sbjct: 91  AQQ-------NKLKHLTIVSLASRMKC-IPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQ 142

Query: 359 CKLDQQNEKVLISGAVPRSFGPDQWTKLYRDLQMW 463
            KLDQ+N+ + +   + R         + + L  W
Sbjct: 143 GKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEW 177
>sp|Q9UBW8|CSN7A_HUMAN COP9 signalosome complex subunit 7a (Signalosome subunit 7a)
           (SGN7a) (JAB1-containing signalosome subunit 7a) (Dermal
           papilla derived protein 10)
 sp|Q5R762|CSN7A_PONPY COP9 signalosome complex subunit 7a (Signalosome subunit 7a)
           (SGN7a) (JAB1-containing signalosome subunit 7a)
          Length = 275

 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 4/169 (2%)
 Frame = +2

Query: 23  LQDPNALTMDQILELKPVQCLAGE---AIHDLLSIFVSGTINDYRKFLDDHPDFMEKYEL 193
           L+ P      ++L++  V+ LA     +   LL++F  GT  DY     + P   E  + 
Sbjct: 35  LEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVFAYGTYADYLAEARNLPPLTEAQK- 93

Query: 194 DKEACLTKIRILSLMTLAAGDTTELSYDTIQKELQLERA-ELEAFVIEAVRQQAVTCKLD 370
                  K+R LS++TLAA     + Y  + + L L    +LE  VIEAV    +   LD
Sbjct: 94  ------NKLRHLSVVTLAA-KVKCIPYAVLLEALALRNVRQLEDLVIEAVYADVLRGSLD 146

Query: 371 QQNEKVLISGAVPRSFGPDQWTKLYRDLQMWQNNFKIITEDLRKLRSDA 517
           Q+N+++ +  ++ R       + + R LQ W    +++   + +  S A
Sbjct: 147 QRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRA 195
>sp|Q94JU3|CSN7_ARATH COP9 signalosome complex subunit 7 (CSN complex subunit 7) (FUSCA
           protein 5) (FUSCA5)
          Length = 260

 Score = 48.9 bits (115), Expect = 9e-06
 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 5/158 (3%)
 Frame = +2

Query: 11  IVTALQDPNALTMDQILELKPVQCLAG--EAIH-DLLSIFVSGTINDYRKFLDDHPDFME 181
           I+ A   P+     +IL L  V  L G  ++++ DLL +F  GT  DY+      P    
Sbjct: 30  IIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATRLPHLSP 89

Query: 182 KYELDKEACLTKIRILSLMTLAAGDTTELSYDTIQKELQLERA-ELEAFVI-EAVRQQAV 355
                    + K++ L+++TLA  +   L YDT+  EL +    ELE F+I E +    V
Sbjct: 90  DQ-------ILKLKQLTVLTLAESNKV-LPYDTLMVELDVSNVRELEDFLINECMYAGIV 141

Query: 356 TCKLDQQNEKVLISGAVPRSFGPDQWTKLYRDLQMWQN 469
             KLDQ      +  A  R   P Q   +   L  W N
Sbjct: 142 RGKLDQLKRCFEVPFAAGRDLRPGQLGNMLHTLSNWLN 179
>sp|Q9CZ04|CSN7A_MOUSE COP9 signalosome complex subunit 7a (Signalosome subunit 7a)
           (SGN7a) (JAB1-containing signalosome subunit 7a)
          Length = 275

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 4/169 (2%)
 Frame = +2

Query: 23  LQDPNALTMDQILELKPVQCLAGE---AIHDLLSIFVSGTINDYRKFLDDHPDFMEKYEL 193
           L+ P      ++L++  V+ LA     +   LL++F  GT  DY     + P   +  + 
Sbjct: 35  LEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVFAYGTYADYLAEARNLPPLTDAQK- 93

Query: 194 DKEACLTKIRILSLMTLAAGDTTELSYDTIQKELQLERA-ELEAFVIEAVRQQAVTCKLD 370
                  K+R LS++TLAA     + Y  + + L L    +LE  VIEAV    +   LD
Sbjct: 94  ------NKLRHLSVVTLAA-KVKCIPYAVLLEALALRNVRQLEDLVIEAVYADVLRGSLD 146

Query: 371 QQNEKVLISGAVPRSFGPDQWTKLYRDLQMWQNNFKIITEDLRKLRSDA 517
           Q+N+++ +  ++ R       + + + LQ W    +++   + +  S A
Sbjct: 147 QRNQRLEVDYSIGRDIQRQDLSAIAQTLQEWCVGCEVVLSGIEEQVSRA 195
>sp|Q04062|RPN9_YEAST 26S proteasome regulatory subunit RPN9 (Proteasome non-ATPase
           subunit 7)
          Length = 393

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 10/162 (6%)
 Frame = +2

Query: 14  VTALQDPNALTMDQILELKPVQCLAGEAIHD-LLSIFVSGTINDYRKFLDDHPDFMEKYE 190
           ++AL         ++L    ++ +  ++ +D L  +  + T+ D+ KF     D + K +
Sbjct: 219 ISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKF-----DSLIKVQ 273

Query: 191 LDKEACLT--------KIRILSLM-TLAAGDTTELSYDTIQKELQLERAELEAFVIEAVR 343
           + K   L         KI +++L+ T+   +   LS++ I K   L +  +E  V+ A+ 
Sbjct: 274 ISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLPKDNVEHLVMRAIS 333

Query: 344 QQAVTCKLDQQNEKVLISGAVPRSFGPDQWTKLYRDLQMWQN 469
              +   +DQ NE V IS   PR    DQ TK+   L  W +
Sbjct: 334 LGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWND 375
>sp|Q6IQT4|CSN2_BRARE COP9 signalosome complex subunit 2 (Signalosome subunit 2)
          Length = 443

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
 Frame = +2

Query: 95  AIHDLLSIFVSGTINDYRKFLD-DHPDFMEKYELDK--EACLTKIRILSLMTLAAGDTTE 265
           A+ +L+S + +  I ++ K L  +H + M+   + +  E  L  IR   L+ L     T 
Sbjct: 310 AMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIK-PYTR 368

Query: 266 LSYDTIQKELQLERAELEAFVIEAVRQQAVTCKLDQQNEKVLI-----SGAVPRSFGPDQ 430
           +    I KEL ++ A++E+ +++ +    +  ++DQ N+ + +      GA  R    D+
Sbjct: 369 IHIPFISKELNIDVADVESLLVQCILDNTINGRIDQVNQLLELDHQKRGGA--RYTALDK 426

Query: 431 WTKLYRDL 454
           WT     L
Sbjct: 427 WTNQLNSL 434
>sp|P61201|CSN2_HUMAN COP9 signalosome complex subunit 2 (Signalosome subunit 2) (SGN2)
           (JAB1-containing signalosome subunit 2) (Thyroid
           receptor interacting protein 15) (Alien homolog)
 sp|P61203|CSN2_RAT COP9 signalosome complex subunit 2 (Signalosome subunit 2) (SGN2)
           (JAB1-containing signalosome subunit 2) (Thyroid
           receptor interacting protein 15) (Alien homolog)
 sp|P61202|CSN2_MOUSE COP9 signalosome complex subunit 2 (Signalosome subunit 2) (SGN2)
           (JAB1-containing signalosome subunit 2) (Thyroid
           receptor interacting protein 15) (Alien homolog)
          Length = 443

 Score = 34.3 bits (77), Expect = 0.22
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
 Frame = +2

Query: 95  AIHDLLSIFVSGTINDYRKFLD-DHPDFMEKYELDK--EACLTKIRILSLMTLAAGDTTE 265
           A+ +L+S + +  I ++ K L  +H + M+   + +  E  L  IR   L+ L     T 
Sbjct: 310 AMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIK-PYTR 368

Query: 266 LSYDTIQKELQLERAELEAFVIEAVRQQAVTCKLDQQNEKVLI-----SGAVPRSFGPDQ 430
           +    I KEL ++ A++E+ +++ +    +  ++DQ N+ + +      GA  R    D+
Sbjct: 369 IHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGA--RYTALDK 426

Query: 431 WTKLYRDL 454
           WT     L
Sbjct: 427 WTNQLNSL 434
>sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Signalosome subunit 2)
          Length = 441

 Score = 34.3 bits (77), Expect = 0.22
 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
 Frame = +2

Query: 95  AIHDLLSIFVSGTINDYRKFLD-DHPDFMEKYELDK--EACLTKIRILSLMTLAAGDTTE 265
           A+ +L+S + +  I ++ K L  +H + M+   + +  E  L  IR   L+ L     T 
Sbjct: 308 AMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIK-PYTR 366

Query: 266 LSYDTIQKELQLERAELEAFVIEAVRQQAVTCKLDQQNEKVLI-----SGAVPRSFGPDQ 430
           +    I KEL ++ A++E+ +++ +    +  ++DQ N+ + +      GA  R    D+
Sbjct: 367 IHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGA--RYTALDK 424

Query: 431 WTKLYRDL 454
           WT     L
Sbjct: 425 WTNQLNSL 432
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,689,207
Number of Sequences: 369166
Number of extensions: 1010288
Number of successful extensions: 2727
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2724
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00155

  1. Dr_sW_004_M17
  2. Dr_sW_017_E02