DrC_00155
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00155 (569 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q94261|CSN7_CAEEL Probable COP9 signalosome complex subu... 94 3e-19 sp|Q9H9Q2|CSN7B_HUMAN COP9 signalosome complex subunit 7b (... 50 4e-06 sp|Q8BV13|CSN7B_MOUSE COP9 signalosome complex subunit 7b (... 50 5e-06 sp|Q9UBW8|CSN7A_HUMAN COP9 signalosome complex subunit 7a (... 49 7e-06 sp|Q94JU3|CSN7_ARATH COP9 signalosome complex subunit 7 (CS... 49 9e-06 sp|Q9CZ04|CSN7A_MOUSE COP9 signalosome complex subunit 7a (... 47 4e-05 sp|Q04062|RPN9_YEAST 26S proteasome regulatory subunit RPN9... 45 1e-04 sp|Q6IQT4|CSN2_BRARE COP9 signalosome complex subunit 2 (Si... 35 0.13 sp|P61201|CSN2_HUMAN COP9 signalosome complex subunit 2 (Si... 34 0.22 sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Si... 34 0.22
>sp|Q94261|CSN7_CAEEL Probable COP9 signalosome complex subunit 7 (Signalosome subunit 7) Length = 390 Score = 93.6 bits (231), Expect = 3e-19 Identities = 54/163 (33%), Positives = 97/163 (59%), Gaps = 4/163 (2%) Frame = +2 Query: 2 VRCIVTALQDPNALTMDQILELKPVQCL--AGEAIHDLLSIFVSGTINDYRKFLDDHPDF 175 + C+ TA+ DP + + D + L V+ L + + L +F+SGT+ DY++F+ +P F Sbjct: 213 MECVRTAVVDPKSFSFDHLERLSAVKALKTSDPLMFTALELFISGTLKDYKEFVAKNPKF 272 Query: 176 M-EKYELDKEACLTKIRILSLMTLAAGDTTELSYDTIQKELQLERAE-LEAFVIEAVRQQ 349 + E ++D+ L KIR+L+LM+LA + E+S D + K+L + E LE FVI+A++ Sbjct: 273 VTEHLKVDETILLKKIRLLTLMSLAE-EKNEISLDELAKQLDILADETLEEFVIDAIQVN 331 Query: 350 AVTCKLDQQNEKVLISGAVPRSFGPDQWTKLYRDLQMWQNNFK 478 A++ K+++ +++S R FG +QW L + L++ N K Sbjct: 332 AISGKINEMARTLIVSSYQHRRFGTEQWVLLEKRLKVLIANLK 374
>sp|Q9H9Q2|CSN7B_HUMAN COP9 signalosome complex subunit 7b (Signalosome subunit 7b) (SGN7b) (JAB1-containing signalosome subunit 7b) Length = 264 Score = 50.1 bits (118), Expect = 4e-06 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 4/155 (2%) Frame = +2 Query: 11 IVTALQDPNALTMDQILELKPVQCLA---GEAIHDLLSIFVSGTINDYRKFLDDHPDFME 181 I L+ P ++LEL VQ LA A LL++F GT DY + P+ Sbjct: 31 ISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLNLFAYGTYPDYIANKESLPELST 90 Query: 182 KYELDKEACLTKIRILSLMTLAAGDTTELSYDTIQKELQLERA-ELEAFVIEAVRQQAVT 358 + K++ L++++LA+ + Y + K+L++ ELE +IEAV + Sbjct: 91 AQQ-------NKLKHLTIVSLASRMKC-IPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQ 142 Query: 359 CKLDQQNEKVLISGAVPRSFGPDQWTKLYRDLQMW 463 KLDQ+N+ + + + R + + L W Sbjct: 143 GKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEW 177
>sp|Q8BV13|CSN7B_MOUSE COP9 signalosome complex subunit 7b (Signalosome subunit 7b) (SGN7b) (JAB1-containing signalosome subunit 7b) Length = 264 Score = 49.7 bits (117), Expect = 5e-06 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 4/155 (2%) Frame = +2 Query: 11 IVTALQDPNALTMDQILELKPVQCLA---GEAIHDLLSIFVSGTINDYRKFLDDHPDFME 181 I L+ P ++LEL VQ LA A LL++F GT DY + P+ Sbjct: 31 ISQVLEAPGVYVFGELLELANVQELAEGANAAYLQLLNLFAYGTYPDYIANKESLPELSV 90 Query: 182 KYELDKEACLTKIRILSLMTLAAGDTTELSYDTIQKELQLERA-ELEAFVIEAVRQQAVT 358 + K++ L++++LA+ + Y + K+L++ ELE +IEAV + Sbjct: 91 AQQ-------NKLKHLTIVSLASRMKC-IPYSVLLKDLEMRNLRELEDLIIEAVYTDIIQ 142 Query: 359 CKLDQQNEKVLISGAVPRSFGPDQWTKLYRDLQMW 463 KLDQ+N+ + + + R + + L W Sbjct: 143 GKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEW 177
>sp|Q9UBW8|CSN7A_HUMAN COP9 signalosome complex subunit 7a (Signalosome subunit 7a) (SGN7a) (JAB1-containing signalosome subunit 7a) (Dermal papilla derived protein 10) sp|Q5R762|CSN7A_PONPY COP9 signalosome complex subunit 7a (Signalosome subunit 7a) (SGN7a) (JAB1-containing signalosome subunit 7a) Length = 275 Score = 49.3 bits (116), Expect = 7e-06 Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 4/169 (2%) Frame = +2 Query: 23 LQDPNALTMDQILELKPVQCLAGE---AIHDLLSIFVSGTINDYRKFLDDHPDFMEKYEL 193 L+ P ++L++ V+ LA + LL++F GT DY + P E + Sbjct: 35 LEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVFAYGTYADYLAEARNLPPLTEAQK- 93 Query: 194 DKEACLTKIRILSLMTLAAGDTTELSYDTIQKELQLERA-ELEAFVIEAVRQQAVTCKLD 370 K+R LS++TLAA + Y + + L L +LE VIEAV + LD Sbjct: 94 ------NKLRHLSVVTLAA-KVKCIPYAVLLEALALRNVRQLEDLVIEAVYADVLRGSLD 146 Query: 371 QQNEKVLISGAVPRSFGPDQWTKLYRDLQMWQNNFKIITEDLRKLRSDA 517 Q+N+++ + ++ R + + R LQ W +++ + + S A Sbjct: 147 QRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRA 195
>sp|Q94JU3|CSN7_ARATH COP9 signalosome complex subunit 7 (CSN complex subunit 7) (FUSCA protein 5) (FUSCA5) Length = 260 Score = 48.9 bits (115), Expect = 9e-06 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 5/158 (3%) Frame = +2 Query: 11 IVTALQDPNALTMDQILELKPVQCLAG--EAIH-DLLSIFVSGTINDYRKFLDDHPDFME 181 I+ A P+ +IL L V L G ++++ DLL +F GT DY+ P Sbjct: 30 IIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATRLPHLSP 89 Query: 182 KYELDKEACLTKIRILSLMTLAAGDTTELSYDTIQKELQLERA-ELEAFVI-EAVRQQAV 355 + K++ L+++TLA + L YDT+ EL + ELE F+I E + V Sbjct: 90 DQ-------ILKLKQLTVLTLAESNKV-LPYDTLMVELDVSNVRELEDFLINECMYAGIV 141 Query: 356 TCKLDQQNEKVLISGAVPRSFGPDQWTKLYRDLQMWQN 469 KLDQ + A R P Q + L W N Sbjct: 142 RGKLDQLKRCFEVPFAAGRDLRPGQLGNMLHTLSNWLN 179
>sp|Q9CZ04|CSN7A_MOUSE COP9 signalosome complex subunit 7a (Signalosome subunit 7a) (SGN7a) (JAB1-containing signalosome subunit 7a) Length = 275 Score = 46.6 bits (109), Expect = 4e-05 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 4/169 (2%) Frame = +2 Query: 23 LQDPNALTMDQILELKPVQCLAGE---AIHDLLSIFVSGTINDYRKFLDDHPDFMEKYEL 193 L+ P ++L++ V+ LA + LL++F GT DY + P + + Sbjct: 35 LEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVFAYGTYADYLAEARNLPPLTDAQK- 93 Query: 194 DKEACLTKIRILSLMTLAAGDTTELSYDTIQKELQLERA-ELEAFVIEAVRQQAVTCKLD 370 K+R LS++TLAA + Y + + L L +LE VIEAV + LD Sbjct: 94 ------NKLRHLSVVTLAA-KVKCIPYAVLLEALALRNVRQLEDLVIEAVYADVLRGSLD 146 Query: 371 QQNEKVLISGAVPRSFGPDQWTKLYRDLQMWQNNFKIITEDLRKLRSDA 517 Q+N+++ + ++ R + + + LQ W +++ + + S A Sbjct: 147 QRNQRLEVDYSIGRDIQRQDLSAIAQTLQEWCVGCEVVLSGIEEQVSRA 195
>sp|Q04062|RPN9_YEAST 26S proteasome regulatory subunit RPN9 (Proteasome non-ATPase subunit 7) Length = 393 Score = 45.1 bits (105), Expect = 1e-04 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 10/162 (6%) Frame = +2 Query: 14 VTALQDPNALTMDQILELKPVQCLAGEAIHD-LLSIFVSGTINDYRKFLDDHPDFMEKYE 190 ++AL ++L ++ + ++ +D L + + T+ D+ KF D + K + Sbjct: 219 ISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKF-----DSLIKVQ 273 Query: 191 LDKEACLT--------KIRILSLM-TLAAGDTTELSYDTIQKELQLERAELEAFVIEAVR 343 + K L KI +++L+ T+ + LS++ I K L + +E V+ A+ Sbjct: 274 ISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLPKDNVEHLVMRAIS 333 Query: 344 QQAVTCKLDQQNEKVLISGAVPRSFGPDQWTKLYRDLQMWQN 469 + +DQ NE V IS PR DQ TK+ L W + Sbjct: 334 LGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWND 375
>sp|Q6IQT4|CSN2_BRARE COP9 signalosome complex subunit 2 (Signalosome subunit 2) Length = 443 Score = 35.0 bits (79), Expect = 0.13 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 8/128 (6%) Frame = +2 Query: 95 AIHDLLSIFVSGTINDYRKFLD-DHPDFMEKYELDK--EACLTKIRILSLMTLAAGDTTE 265 A+ +L+S + + I ++ K L +H + M+ + + E L IR L+ L T Sbjct: 310 AMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIK-PYTR 368 Query: 266 LSYDTIQKELQLERAELEAFVIEAVRQQAVTCKLDQQNEKVLI-----SGAVPRSFGPDQ 430 + I KEL ++ A++E+ +++ + + ++DQ N+ + + GA R D+ Sbjct: 369 IHIPFISKELNIDVADVESLLVQCILDNTINGRIDQVNQLLELDHQKRGGA--RYTALDK 426 Query: 431 WTKLYRDL 454 WT L Sbjct: 427 WTNQLNSL 434
>sp|P61201|CSN2_HUMAN COP9 signalosome complex subunit 2 (Signalosome subunit 2) (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid receptor interacting protein 15) (Alien homolog) sp|P61203|CSN2_RAT COP9 signalosome complex subunit 2 (Signalosome subunit 2) (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid receptor interacting protein 15) (Alien homolog) sp|P61202|CSN2_MOUSE COP9 signalosome complex subunit 2 (Signalosome subunit 2) (SGN2) (JAB1-containing signalosome subunit 2) (Thyroid receptor interacting protein 15) (Alien homolog) Length = 443 Score = 34.3 bits (77), Expect = 0.22 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 8/128 (6%) Frame = +2 Query: 95 AIHDLLSIFVSGTINDYRKFLD-DHPDFMEKYELDK--EACLTKIRILSLMTLAAGDTTE 265 A+ +L+S + + I ++ K L +H + M+ + + E L IR L+ L T Sbjct: 310 AMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIK-PYTR 368 Query: 266 LSYDTIQKELQLERAELEAFVIEAVRQQAVTCKLDQQNEKVLI-----SGAVPRSFGPDQ 430 + I KEL ++ A++E+ +++ + + ++DQ N+ + + GA R D+ Sbjct: 369 IHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGA--RYTALDK 426 Query: 431 WTKLYRDL 454 WT L Sbjct: 427 WTNQLNSL 434
>sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Signalosome subunit 2) Length = 441 Score = 34.3 bits (77), Expect = 0.22 Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 8/128 (6%) Frame = +2 Query: 95 AIHDLLSIFVSGTINDYRKFLD-DHPDFMEKYELDK--EACLTKIRILSLMTLAAGDTTE 265 A+ +L+S + + I ++ K L +H + M+ + + E L IR L+ L T Sbjct: 308 AMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIK-PYTR 366 Query: 266 LSYDTIQKELQLERAELEAFVIEAVRQQAVTCKLDQQNEKVLI-----SGAVPRSFGPDQ 430 + I KEL ++ A++E+ +++ + + ++DQ N+ + + GA R D+ Sbjct: 367 IHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGA--RYTALDK 424 Query: 431 WTKLYRDL 454 WT L Sbjct: 425 WTNQLNSL 432
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,689,207
Number of Sequences: 369166
Number of extensions: 1010288
Number of successful extensions: 2727
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2724
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
