Planaria EST Database

DrC_00148

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00148
         (738 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P30839|AL3A2_RAT  Fatty aldehyde dehydrogenase (Aldehyde ...    31   3.0  
sp|P50126|NCPR_CANMA  NADPH--cytochrome P450 reductase (CPR)...    30   5.1  
sp|P51648|AL3A2_HUMAN  Fatty aldehyde dehydrogenase (Aldehyd...    30   5.1  
sp|Q925I4|TS1R2_MOUSE  Taste receptor type 1 member 2 precur...    30   8.8  
sp|Q04692|SMRCD_MOUSE  SWI/SNF-related, matrix associated, a...    30   8.8  

>sp|P30839|AL3A2_RAT Fatty aldehyde dehydrogenase (Aldehyde dehydrogenase, microsomal)
           (Aldehyde dehydrogenase family 3 member A2)
          Length = 484

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
 Frame = +3

Query: 90  TWKGKLQELGKQCSAV-IESCESSWKDYAYQQFKETHREIGGDNQAFAERVARDLANVAP 266
           TW GK    G+ C A     CE+S +D   Q+ K+T ++  G+N   +    R + N+  
Sbjct: 230 TW-GKYMNCGQTCIAPDYILCEASSQDQIVQKIKDTVKDFYGENVKASPDYER-IINLRH 287

Query: 267 QRNWLAVIYNDAGGFGPHT-YASYYEAHTIWNEKDHETTIFSTPKEEKLTGDAYNNLVNL 443
            +   +++      FG  T  A+ Y A TI  + D  + +     +E++ G      +  
Sbjct: 288 FKRIKSLLEGQKIAFGGETDEATRYIAPTILTDVDPNSKVM----QEEIFGPILP--IVS 341

Query: 444 INGQKDAIARVNDCQK 491
           +   ++AI  +ND +K
Sbjct: 342 VKNVEEAINFINDREK 357

>sp|P50126|NCPR_CANMA NADPH--cytochrome P450 reductase (CPR) (P450R)
          Length = 680

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
 Frame = +3

Query: 177 QQFKETHREIGGDNQAFAERVARDLANVAPQ-------RNWLAVIYNDAGGFGPHTYASY 335
           ++ K+T   IG D Q FA ++ R   NVA         R W  V +       PH    Y
Sbjct: 381 EETKKTFTRIGNDKQEFANKITRKKLNVADALLFASNGRPWSDVPFEFIIENVPHLQPRY 440

Query: 336 YE-AHTIWNEKDHETTIFSTPKEEKLTGDAYNNLV 437
           Y  + +  +EK           EE+  G A   +V
Sbjct: 441 YSISSSSLSEKQTINITAVVEVEEEADGRAVTGVV 475

>sp|P51648|AL3A2_HUMAN Fatty aldehyde dehydrogenase (Aldehyde dehydrogenase, microsomal)
           (Aldehyde dehydrogenase family 3 member A2)
          Length = 485

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
 Frame = +3

Query: 90  TWKGKLQELGKQCSAV-IESCESSWKDYAYQQFKETHREIGGDNQAFAERVARDLANVAP 266
           TW GK    G+ C A     CE+S ++    + KET +E  G+N   +    R + N+  
Sbjct: 230 TW-GKYMNCGQTCIAPDYILCEASLQNQIVWKIKETVKEFYGENIKESPDYER-IINLRH 287

Query: 267 QRNWLAVIYNDAGGFGPHT-YASYYEAHTIWNEKDHETTI 383
            +  L+++      FG  T  A+ Y A T+  + D +T +
Sbjct: 288 FKRILSLLEGQKIAFGGETDEATRYIAPTVLTDVDPKTKV 327

>sp|Q925I4|TS1R2_MOUSE Taste receptor type 1 member 2 precursor (G-protein coupled
           receptor 71) (Sweet taste receptor T1R2)
          Length = 843

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 663 PFLISCI*CTPSYRLCRLVVHFNCIYHTCHIFLANFRNNSSC 538
           P    C+ C P   L R V  FNC+  +C   + +++NN +C
Sbjct: 516 PCCFECVDCPPGTYLNRSVDEFNCL--SCPGSMWSYKNNIAC 555

>sp|Q04692|SMRCD_MOUSE SWI/SNF-related, matrix associated, actin-dependent regulator of
           chromatin subfamily A containing DEAD/H box 1 (Enhancer
           trap locus homolog 1) (Etl-1)
          Length = 1021

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 12/50 (24%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = -1

Query: 441 NLPNYYKHPQLISLLLELKK*WSHDLFHSILYEPRNMRHMYEVQI--PRH 298
           ++ N  K+ ++ +++++L+K  +H L H   Y P  ++ M ++ +  P H
Sbjct: 756 SINNLEKNTEMCNVMMQLRKMANHPLLHRQYYTPEKLKEMSQLMLKEPTH 805

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,206,607
Number of Sequences: 369166
Number of extensions: 1656067
Number of successful extensions: 3926
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3926
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00148

  1. Dr_sW_004_L19
  2. Dr_sW_004_K20