Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_L19
(414 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49336|CDK8_HUMAN Cell division protein kinase 8 (Protei... 30 1.5
sp|Q21049|LIPA_CAEEL Liprin alpha (LAR-interacting protein ... 29 4.3
sp|Q96PQ7|KLHL5_HUMAN Kelch-like protein 5 29 4.3
sp|Q9BWU1|CD2L6_HUMAN Cell division cycle 2-like protein ki... 28 5.6
sp|P15627|COAT_SOCMV Coat protein 28 5.6
sp|Q8BWD8|CD2L6_MOUSE Cell division cycle 2-like protein ki... 28 5.6
sp|O18412|FZO_DROME Transmembrane GTPase fzo (Fuzzy onions ... 28 7.3
sp|Q6G0R0|RF1_BARQU Peptide chain release factor 1 (RF-1) 28 7.3
sp|P39730|IF2P_YEAST Eukaryotic translation initiation fact... 28 7.3
sp|P53215|YG1G_YEAST Hypothetical 27.8 kDa protein in VMA7-... 28 9.6
>sp|P49336|CDK8_HUMAN Cell division protein kinase 8 (Protein kinase K35)
Length = 464
Score = 30.4 bits (67), Expect = 1.5
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Frame = -2
Query: 194 KHPQLISLLLEL-----KK*W------SHDLFHSILYEPRNMRHTYEVQIPRHHYK*LLT 48
KHP +ISL +K W HDL+H I + + + VQ+PR K LL
Sbjct: 74 KHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLY 133
Query: 47 NFFEVPHFL 21
+ H+L
Sbjct: 134 QILDGIHYL 142
>sp|Q21049|LIPA_CAEEL Liprin alpha (LAR-interacting protein alpha) (Synapse defective
protein 2)
Length = 1139
Score = 28.9 bits (63), Expect = 4.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 251 DCQKTEFWLIKVDRYKKRRCTNYCYESSREIYDRCGICS*NEPPA 385
D TE LI+ +++ R SSRE YD GI + + P A
Sbjct: 669 DAINTEIRLIQQEKHHAERVAEQLERSSREFYDDQGISTRSSPRA 713
>sp|Q96PQ7|KLHL5_HUMAN Kelch-like protein 5
Length = 755
Score = 28.9 bits (63), Expect = 4.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 368 NCIYHTCHIFLANFRNNSSCIFVFCNGLLLLTRIRSFDNH 249
N IY HIF+ R +S + V C L + R D+H
Sbjct: 2 NVIYFPLHIFVVYSRAYTSLVLVGCTNLCAVLFARCLDDH 41
>sp|Q9BWU1|CD2L6_HUMAN Cell division cycle 2-like protein kinase 6 (CDC2-related protein
kinase 6) (Death-preventing kinase) (Cyclin-dependent
kinase 11)
Length = 502
Score = 28.5 bits (62), Expect = 5.6
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Frame = -2
Query: 194 KHPQLISLLLEL-----KK*W------SHDLFHSILYEPRNMRHTYEVQIPRHHYK*LLT 48
KHP +I+L +K W HDL+H I + + + +Q+PR K LL
Sbjct: 74 KHPNVIALQKVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLY 133
Query: 47 NFFEVPHFL 21
+ H+L
Sbjct: 134 QILDGIHYL 142
>sp|P15627|COAT_SOCMV Coat protein
Length = 441
Score = 28.5 bits (62), Expect = 5.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 191 HPQLISLLLELKK*WSHDLFHSILYEPRNMRHTYEVQIP 75
H LI++ ELK S D F+ ++Y+ R + H Y +P
Sbjct: 130 HSILITINEELKNLSSLDTFYYLVYKTRGIAHAYLSNLP 168
>sp|Q8BWD8|CD2L6_MOUSE Cell division cycle 2-like protein kinase 6 (CDC2-related protein
kinase 6)
Length = 501
Score = 28.5 bits (62), Expect = 5.6
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Frame = -2
Query: 194 KHPQLISLLLEL-----KK*W------SHDLFHSILYEPRNMRHTYEVQIPRHHYK*LLT 48
KHP +I+L +K W HDL+H I + + + +Q+PR K LL
Sbjct: 74 KHPNVIALQKVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLY 133
Query: 47 NFFEVPHFL 21
+ H+L
Sbjct: 134 QILDGIHYL 142
>sp|O18412|FZO_DROME Transmembrane GTPase fzo (Fuzzy onions protein)
Length = 718
Score = 28.1 bits (61), Expect = 7.3
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 212 LINGQKDAIARVNDCQKTEFWLIKVDRYKKRRCTNYCYESSREIYDRCGICS*NE 376
LI+ K+ A +N + E WLI + + R YC+E E+ R G C N+
Sbjct: 372 LIDENKERRANLN--AEIEDWLILMQ--EDREALQYCFEELTEMTQRVGRCVLND 422
>sp|Q6G0R0|RF1_BARQU Peptide chain release factor 1 (RF-1)
Length = 359
Score = 28.1 bits (61), Expect = 7.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 222 DKRMQLLESMIVKRPNSG**K*TVTKNEDARTIVTKVR 335
+KR +++ES + K P+SG ++ D + IVT +R
Sbjct: 13 EKRFEIIESQMAKNPDSGTYVKLASEYADLQPIVTSIR 50
>sp|P39730|IF2P_YEAST Eukaryotic translation initiation factor 5B (eIF-5B) (Translation
initiation factor IF-2)
Length = 1002
Score = 28.1 bits (61), Expect = 7.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +3
Query: 324 TKVREKYMTGVVYAVKMNHQPAQAVTGG 407
TK R+ + G V ++++NHQP Q V G
Sbjct: 906 TKERQTLILGKVISLEINHQPVQEVKKG 933
>sp|P53215|YG1G_YEAST Hypothetical 27.8 kDa protein in VMA7-RPS25A intergenic region
Length = 237
Score = 27.7 bits (60), Expect = 9.6
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Frame = +2
Query: 245 VNDCQKTEFWLIKV------DRYKKRRCTNYCYESSREIYDRCGICS*NEPPACTSGN 400
+N+ T FW + + +K+ C + E ++ CGI NEP G+
Sbjct: 156 INNLYNTTFWQLIIKCGLTPQESEKKLCGTFSNEKQEILFSECGINYNNEPEMFKKGS 213
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,544,466
Number of Sequences: 369166
Number of extensions: 973920
Number of successful extensions: 2240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2240
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)