Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_K20
(737 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q00174|LAMA_DROME Laminin alpha chain precursor 32 1.8
sp|Q925I4|TS1R2_MOUSE Taste receptor type 1 member 2 precur... 31 3.0
sp|P50126|NCPR_CANMA NADPH--cytochrome P450 reductase (CPR)... 30 5.1
sp|P30839|AL3A2_RAT Fatty aldehyde dehydrogenase (Aldehyde ... 30 5.1
>sp|Q00174|LAMA_DROME Laminin alpha chain precursor
Length = 3712
Score = 32.0 bits (71), Expect = 1.8
Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 29/125 (23%)
Frame = +3
Query: 258 VAPQRNWLAVIYNDAGGFGPH------------TYSSYYEAHTIWNEKDHDTTIFSTPKE 401
+ Q L + ND G F H S+ E + N+K D + F T E
Sbjct: 2297 IKAQNKSLNALKNDIGEFSDHLEDLFNWSEASQAKSADVERRNVANQKAFDNSKFDTVSE 2356
Query: 402 EKLTG-----DAYNNLVN----------LINGQKDAIARVNDCQKT--EFWLIKVDRYKN 530
+KL DA N L+N ++ +DA+ +N K E ++ D++K
Sbjct: 2357 QKLQAEKNIKDAGNFLINGDLTLNQINQKLDNLRDALNELNSFNKNVDEELPVREDQHKE 2416
Query: 531 EDART 545
DA T
Sbjct: 2417 ADALT 2421
>sp|Q925I4|TS1R2_MOUSE Taste receptor type 1 member 2 precursor (G-protein coupled
receptor 71) (Sweet taste receptor T1R2)
Length = 843
Score = 31.2 bits (69), Expect = 3.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 662 PFLISCI*CTPSYRLSRLVVHFNCIYHTCHIFLANFRNNSSC 537
P C+ C P L+R V FNC+ +C + +++NN +C
Sbjct: 516 PCCFECVDCPPGTYLNRSVDEFNCL--SCPGSMWSYKNNIAC 555
>sp|P50126|NCPR_CANMA NADPH--cytochrome P450 reductase (CPR) (P450R)
Length = 680
Score = 30.4 bits (67), Expect = 5.1
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 8/95 (8%)
Frame = +3
Query: 177 QQFKETHREIGGDNQAFAERVARDLANVAPQ-------RNWLAVIYNDAGGFGPHTYSSY 335
++ K+T IG D Q FA ++ R NVA R W V + PH Y
Sbjct: 381 EETKKTFTRIGNDKQEFANKITRKKLNVADALLFASNGRPWSDVPFEFIIENVPHLQPRY 440
Query: 336 YE-AHTIWNEKDHDTTIFSTPKEEKLTGDAYNNLV 437
Y + + +EK EE+ G A +V
Sbjct: 441 YSISSSSLSEKQTINITAVVEVEEEADGRAVTGVV 475
>sp|P30839|AL3A2_RAT Fatty aldehyde dehydrogenase (Aldehyde dehydrogenase, microsomal)
(Aldehyde dehydrogenase family 3 member A2)
Length = 484
Score = 30.4 bits (67), Expect = 5.1
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Frame = +3
Query: 90 TWKGKLQELGKQCSAV-IESCESSWKDYAYQQFKETHREIGGDNQAFAERVARDLANVAP 266
TW GK G+ C A CE+S +D Q+ K+T ++ G+N + R + N+
Sbjct: 230 TW-GKYMNCGQTCIAPDYILCEASSQDQIVQKIKDTVKDFYGENVKASPDYER-IINLRH 287
Query: 267 QRNWLAVIYNDAGGFGPHT-YSSYYEAHTIWNEKDHDTTIFSTPKEEKLTGDAYNNLVNL 443
+ +++ FG T ++ Y A TI + D ++ + +E++ G +
Sbjct: 288 FKRIKSLLEGQKIAFGGETDEATRYIAPTILTDVDPNSKVM----QEEIFGPILP--IVS 341
Query: 444 INGQKDAIARVNDCQK 491
+ ++AI +ND +K
Sbjct: 342 VKNVEEAINFINDREK 357
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,021,918
Number of Sequences: 369166
Number of extensions: 1642768
Number of successful extensions: 4154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4153
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)