Planaria EST Database

DrC_00146

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00146
         (381 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P45842|RL34_AEDAL  60S ribosomal protein L34 (L31)             109   2e-24
sp|Q9NB34|RL34_AEDTR  60S ribosomal protein L34                   109   2e-24
sp|P87262|RL34A_YEAST  60S ribosomal protein L34-A                101   5e-22
sp|P40525|RL34B_YEAST  60S ribosomal protein L34-B                101   6e-22
sp|Q9D1R9|RL34_MOUSE  60S ribosomal protein L34                    95   6e-20
sp|Q7ZWJ7|RL34_BRARE  60S ribosomal protein L34                    94   1e-19
sp|Q90YT5|RL34_ICTPU  60S ribosomal protein L34                    94   1e-19
sp|P49207|RL34_HUMAN  60S ribosomal protein L34                    93   2e-19
sp|O42846|RL34A_SCHPO  60S ribosomal protein L34-A                 90   2e-18
sp|Q9URT8|RL34B_SCHPO  60S ribosomal protein L34-B (60S ribo...    89   3e-18

>sp|P45842|RL34_AEDAL 60S ribosomal protein L34 (L31)
          Length = 130

 Score =  109 bits (272), Expect = 2e-24
 Identities = 49/84 (58%), Positives = 64/84 (76%)
 Frame = +3

Query: 96  RTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHS 275
           RTPGG+LVY+Y KK+ TVPKCG CK  L GIK  RP ER R+ +R KTV+R +GG  CH 
Sbjct: 24  RTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSERPRMCRRLKTVTRTFGGVLCHR 83

Query: 276 CVKKRIIRSFLVEEDKLIAKLKKQ 347
           C+++RIIR+FL++E K++  LK Q
Sbjct: 84  CLRERIIRAFLIDEQKVVKVLKAQ 107


 Score = 33.5 bits (75), Expect = 0.15
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 28 MQRLTLRRRLSYNTNSN 78
          +QRLTLRRRLSYNT SN
Sbjct: 2  VQRLTLRRRLSYNTKSN 18

>sp|Q9NB34|RL34_AEDTR 60S ribosomal protein L34
          Length = 139

 Score =  109 bits (272), Expect = 2e-24
 Identities = 49/84 (58%), Positives = 64/84 (76%)
 Frame = +3

Query: 96  RTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHS 275
           RTPGG+LVY+Y KK+ TVPKCG CK  L GIK  RP ER R+ +R KTV+R +GG  CH 
Sbjct: 24  RTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSERPRMCRRLKTVTRTFGGVLCHR 83

Query: 276 CVKKRIIRSFLVEEDKLIAKLKKQ 347
           C+++RIIR+FL++E K++  LK Q
Sbjct: 84  CLRERIIRAFLIDEQKVVKVLKAQ 107


 Score = 33.5 bits (75), Expect = 0.15
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 28 MQRLTLRRRLSYNTNSN 78
          +QRLTLRRRLSYNT SN
Sbjct: 2  VQRLTLRRRLSYNTKSN 18

>sp|P87262|RL34A_YEAST 60S ribosomal protein L34-A
          Length = 121

 Score =  101 bits (252), Expect = 5e-22
 Identities = 49/84 (58%), Positives = 62/84 (73%)
 Frame = +3

Query: 96  RTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHS 275
           +TPGG L   + KK  T PKCGDC  AL GI  +RP + + VSK  KTVSRAYGGSRC +
Sbjct: 24  KTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCAN 83

Query: 276 CVKKRIIRSFLVEEDKLIAKLKKQ 347
           CVK+RIIR+FL+EE K++ K+ K+
Sbjct: 84  CVKERIIRAFLIEEQKIVKKVVKE 107

>sp|P40525|RL34B_YEAST 60S ribosomal protein L34-B
          Length = 121

 Score =  101 bits (251), Expect = 6e-22
 Identities = 48/84 (57%), Positives = 62/84 (73%)
 Frame = +3

Query: 96  RTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHS 275
           +TPGG L   + KK  T PKCGDC  AL GI  +RP + + VSK  KTVSRAYGGSRC +
Sbjct: 24  KTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCAN 83

Query: 276 CVKKRIIRSFLVEEDKLIAKLKKQ 347
           CVK+RI+R+FL+EE K++ K+ K+
Sbjct: 84  CVKERIVRAFLIEEQKIVKKVVKE 107

>sp|Q9D1R9|RL34_MOUSE 60S ribosomal protein L34
          Length = 117

 Score = 94.7 bits (234), Expect = 6e-20
 Identities = 46/86 (53%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
 Frame = +3

Query: 93  TRTPGGKLVYIYQKKKGTVPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSR 266
           +RTPG ++VY+Y KK G  PK  CG C   L G++A+RP    R+SK QK VSRAYGGS 
Sbjct: 23  SRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTQKHVSRAYGGSM 82

Query: 267 CHSCVKKRIIRSFLVEEDKLIAKLKK 344
           C  CV+ RI R+FL+EE K++ K+ K
Sbjct: 83  CAKCVRDRIKRAFLIEEQKIVVKVLK 108


 Score = 30.8 bits (68), Expect = 1.0
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 28 MQRLTLRRRLSYNTNSN 78
          +QRLT RRRLSYNT SN
Sbjct: 2  VQRLTYRRRLSYNTASN 18

>sp|Q7ZWJ7|RL34_BRARE 60S ribosomal protein L34
          Length = 117

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 48/93 (51%), Positives = 62/93 (66%), Gaps = 2/93 (2%)
 Frame = +3

Query: 93  TRTPGGKLVYIYQKKKGTVPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSR 266
           +RTPG ++VY+Y KK G  PK  CG C   L GI+A+RP    R+SK +K VSRAYGGS 
Sbjct: 23  SRTPGNRIVYLYTKKTGKSPKSACGICPGRLRGIRAVRPQVLMRLSKTKKHVSRAYGGSM 82

Query: 267 CHSCVKKRIIRSFLVEEDKLIAKLKKQN*FTNK 365
           C  CV+ RI R+FL+EE K++ K+ K    T K
Sbjct: 83  CAKCVRDRIKRAFLIEEQKIVVKVLKAQAQTQK 115


 Score = 30.8 bits (68), Expect = 1.0
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 28 MQRLTLRRRLSYNTNSN 78
          +QRLT RRRLSYNT SN
Sbjct: 2  VQRLTYRRRLSYNTASN 18

>sp|Q90YT5|RL34_ICTPU 60S ribosomal protein L34
          Length = 117

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 46/86 (53%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
 Frame = +3

Query: 93  TRTPGGKLVYIYQKKKGTVPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSR 266
           +RTPG ++VY+Y KK G  PK  CG C   L GI+A+RP    R+SK +K VSRAYGGS 
Sbjct: 23  SRTPGNRIVYLYTKKTGKAPKSACGICPGRLRGIRAVRPQVLMRLSKTKKHVSRAYGGSM 82

Query: 267 CHSCVKKRIIRSFLVEEDKLIAKLKK 344
           C  CV+ RI R+FL+EE K++ K+ K
Sbjct: 83  CAKCVRDRIKRAFLIEEQKIVVKVLK 108


 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 28 MQRLTLRRRLSYNTNSN 78
          +QRLT RR +SYNT SN
Sbjct: 2  VQRLTYRRTVSYNTTSN 18

>sp|P49207|RL34_HUMAN 60S ribosomal protein L34
          Length = 117

 Score = 93.2 bits (230), Expect = 2e-19
 Identities = 45/86 (52%), Positives = 60/86 (69%), Gaps = 2/86 (2%)
 Frame = +3

Query: 93  TRTPGGKLVYIYQKKKGTVPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSR 266
           +RTPG ++VY+Y KK G  PK  CG C   L G++A+RP    R+SK +K VSRAYGGS 
Sbjct: 23  SRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSM 82

Query: 267 CHSCVKKRIIRSFLVEEDKLIAKLKK 344
           C  CV+ RI R+FL+EE K++ K+ K
Sbjct: 83  CAKCVRDRIKRAFLIEEQKIVVKVLK 108


 Score = 30.8 bits (68), Expect = 1.0
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 28 MQRLTLRRRLSYNTNSN 78
          +QRLT RRRLSYNT SN
Sbjct: 2  VQRLTYRRRLSYNTASN 18

>sp|O42846|RL34A_SCHPO 60S ribosomal protein L34-A
          Length = 112

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 41/84 (48%), Positives = 59/84 (70%)
 Frame = +3

Query: 96  RTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHS 275
           +TPG  + Y++ KK GT+P+CGD  + L GI A+RP E +R+S  +KTV RAYGG    +
Sbjct: 24  KTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRpreFARLSHNKKTVQRAYGGCLSAN 83

Query: 276 CVKKRIIRSFLVEEDKLIAKLKKQ 347
            VK RI+R+FL+EE K++ +  KQ
Sbjct: 84  AVKDRIVRAFLIEEQKIVKQKLKQ 107


 Score = 28.9 bits (63), Expect = 3.8
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +1

Query: 31 QRLTLRRRLSYNTNSN 78
          QR+T RRRL+YNT SN
Sbjct: 3  QRVTYRRRLAYNTRSN 18

>sp|Q9URT8|RL34B_SCHPO 60S ribosomal protein L34-B (60S ribosomal protein L34-2)
          Length = 111

 Score = 89.0 bits (219), Expect = 3e-18
 Identities = 41/84 (48%), Positives = 58/84 (69%)
 Frame = +3

Query: 96  RTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHS 275
           +TPG  + Y++ KK GT+P+CGD  + L GI A+RP E +R+S  QK V RAYGG    +
Sbjct: 24  KTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRpreFARLSHNQKKVQRAYGGCLSAN 83

Query: 276 CVKKRIIRSFLVEEDKLIAKLKKQ 347
            VK RI+R+FL+EE K++ +  KQ
Sbjct: 84  AVKDRIVRAFLIEEQKIVKQKLKQ 107


 Score = 28.9 bits (63), Expect = 3.8
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +1

Query: 31 QRLTLRRRLSYNTNSN 78
          QR+T RRRL+YNT SN
Sbjct: 3  QRVTYRRRLAYNTRSN 18

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,669,066
Number of Sequences: 369166
Number of extensions: 768990
Number of successful extensions: 1806
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1794
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00146

  1. Dr_sW_004_J23
  2. Dr_sW_001_M24
  3. Dr_sW_005_K18