Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_J23
(374 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P45842|RL34_AEDAL 60S ribosomal protein L34 (L31) 139 3e-33
sp|Q9NB34|RL34_AEDTR 60S ribosomal protein L34 139 3e-33
sp|P87262|RL34A_YEAST 60S ribosomal protein L34-A 120 7e-28
sp|P40525|RL34B_YEAST 60S ribosomal protein L34-B 120 1e-27
sp|Q9D1R9|RL34_MOUSE 60S ribosomal protein L34 119 2e-27
sp|Q7ZWJ7|RL34_BRARE 60S ribosomal protein L34 118 4e-27
sp|P49207|RL34_HUMAN 60S ribosomal protein L34 117 6e-27
sp|Q90YT5|RL34_ICTPU 60S ribosomal protein L34 115 2e-26
sp|O42846|RL34A_SCHPO 60S ribosomal protein L34-A 112 2e-25
sp|Q9URT8|RL34B_SCHPO 60S ribosomal protein L34-B (60S ribo... 110 8e-25
>sp|P45842|RL34_AEDAL 60S ribosomal protein L34 (L31)
Length = 130
Score = 139 bits (349), Expect = 3e-33
Identities = 65/106 (61%), Positives = 82/106 (77%)
Frame = +1
Query: 28 MQRLTLRRRLSYNTNSNRRVKTRTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCE 207
+QRLTLRRRLSYNT SN+R RTPGG+LVY+Y KK+ TVPKCG CK L GIK RP E
Sbjct: 2 VQRLTLRRRLSYNTKSNKRRVVRTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSE 61
Query: 208 RSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVEEDKLIAKLKKQ 345
R R+ +R KTV+R +GG CH C+++RIIR+FL++E K++ LK Q
Sbjct: 62 RPRMCRRLKTVTRTFGGVLCHRCLRERIIRAFLIDEQKVVKVLKAQ 107
>sp|Q9NB34|RL34_AEDTR 60S ribosomal protein L34
Length = 139
Score = 139 bits (349), Expect = 3e-33
Identities = 65/106 (61%), Positives = 82/106 (77%)
Frame = +1
Query: 28 MQRLTLRRRLSYNTNSNRRVKTRTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCE 207
+QRLTLRRRLSYNT SN+R RTPGG+LVY+Y KK+ TVPKCG CK L GIK RP E
Sbjct: 2 VQRLTLRRRLSYNTKSNKRRVVRTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSE 61
Query: 208 RSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVEEDKLIAKLKKQ 345
R R+ +R KTV+R +GG CH C+++RIIR+FL++E K++ LK Q
Sbjct: 62 RPRMCRRLKTVTRTFGGVLCHRCLRERIIRAFLIDEQKVVKVLKAQ 107
>sp|P87262|RL34A_YEAST 60S ribosomal protein L34-A
Length = 121
Score = 120 bits (302), Expect = 7e-28
Identities = 60/105 (57%), Positives = 75/105 (71%)
Frame = +1
Query: 31 QRLTLRRRLSYNTNSNRRVKTRTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCER 210
QR+T RRR YNT SN+ +TPGG L + KK T PKCGDC AL GI +RP +
Sbjct: 3 QRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQY 62
Query: 211 SRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVEEDKLIAKLKKQ 345
+ VSK KTVSRAYGGSRC +CVK+RIIR+FL+EE K++ K+ K+
Sbjct: 63 ATVSKTHKTVSRAYGGSRCANCVKERIIRAFLIEEQKIVKKVVKE 107
>sp|P40525|RL34B_YEAST 60S ribosomal protein L34-B
Length = 121
Score = 120 bits (301), Expect = 1e-27
Identities = 59/105 (56%), Positives = 75/105 (71%)
Frame = +1
Query: 31 QRLTLRRRLSYNTNSNRRVKTRTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCER 210
QR+T RRR YNT SN+ +TPGG L + KK T PKCGDC AL GI +RP +
Sbjct: 3 QRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPRQY 62
Query: 211 SRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVEEDKLIAKLKKQ 345
+ VSK KTVSRAYGGSRC +CVK+RI+R+FL+EE K++ K+ K+
Sbjct: 63 ATVSKTHKTVSRAYGGSRCANCVKERIVRAFLIEEQKIVKKVVKE 107
>sp|Q9D1R9|RL34_MOUSE 60S ribosomal protein L34
Length = 117
Score = 119 bits (298), Expect = 2e-27
Identities = 60/107 (56%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Frame = +1
Query: 28 MQRLTLRRRLSYNTNSNRRVKTRTPGGKLVYIYQKKKGTVPK--CGDCKIALHGIKAMRP 201
+QRLT RRRLSYNT SN+ +RTPG ++VY+Y KK G PK CG C L G++A+RP
Sbjct: 2 VQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRP 61
Query: 202 CERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVEEDKLIAKLKK 342
R+SK QK VSRAYGGS C CV+ RI R+FL+EE K++ K+ K
Sbjct: 62 KVLMRLSKTQKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLK 108
>sp|Q7ZWJ7|RL34_BRARE 60S ribosomal protein L34
Length = 117
Score = 118 bits (296), Expect = 4e-27
Identities = 62/114 (54%), Positives = 78/114 (68%), Gaps = 2/114 (1%)
Frame = +1
Query: 28 MQRLTLRRRLSYNTNSNRRVKTRTPGGKLVYIYQKKKGTVPK--CGDCKIALHGIKAMRP 201
+QRLT RRRLSYNT SN+ +RTPG ++VY+Y KK G PK CG C L GI+A+RP
Sbjct: 2 VQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKTGKSPKSACGICPGRLRGIRAVRP 61
Query: 202 CERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVEEDKLIAKLKKQN*FTNK 363
R+SK +K VSRAYGGS C CV+ RI R+FL+EE K++ K+ K T K
Sbjct: 62 QVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQTQK 115
>sp|P49207|RL34_HUMAN 60S ribosomal protein L34
Length = 117
Score = 117 bits (294), Expect = 6e-27
Identities = 59/107 (55%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Frame = +1
Query: 28 MQRLTLRRRLSYNTNSNRRVKTRTPGGKLVYIYQKKKGTVPK--CGDCKIALHGIKAMRP 201
+QRLT RRRLSYNT SN+ +RTPG ++VY+Y KK G PK CG C L G++A+RP
Sbjct: 2 VQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRP 61
Query: 202 CERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVEEDKLIAKLKK 342
R+SK +K VSRAYGGS C CV+ RI R+FL+EE K++ K+ K
Sbjct: 62 KVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLK 108
>sp|Q90YT5|RL34_ICTPU 60S ribosomal protein L34
Length = 117
Score = 115 bits (289), Expect = 2e-26
Identities = 58/107 (54%), Positives = 75/107 (70%), Gaps = 2/107 (1%)
Frame = +1
Query: 28 MQRLTLRRRLSYNTNSNRRVKTRTPGGKLVYIYQKKKGTVPK--CGDCKIALHGIKAMRP 201
+QRLT RR +SYNT SN+ +RTPG ++VY+Y KK G PK CG C L GI+A+RP
Sbjct: 2 VQRLTYRRTVSYNTTSNKTRLSRTPGNRIVYLYTKKTGKAPKSACGICPGRLRGIRAVRP 61
Query: 202 CERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVEEDKLIAKLKK 342
R+SK +K VSRAYGGS C CV+ RI R+FL+EE K++ K+ K
Sbjct: 62 QVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLK 108
>sp|O42846|RL34A_SCHPO 60S ribosomal protein L34-A
Length = 112
Score = 112 bits (281), Expect = 2e-25
Identities = 54/105 (51%), Positives = 74/105 (70%)
Frame = +1
Query: 31 QRLTLRRRLSYNTNSNRRVKTRTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCER 210
QR+T RRRL+YNT SNR +TPG + Y++ KK GT+P+CGD + L GI A+RP E
Sbjct: 3 QRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRpreF 62
Query: 211 SRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVEEDKLIAKLKKQ 345
+R+S +KTV RAYGG + VK RI+R+FL+EE K++ + KQ
Sbjct: 63 ARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVKQKLKQ 107
>sp|Q9URT8|RL34B_SCHPO 60S ribosomal protein L34-B (60S ribosomal protein L34-2)
Length = 111
Score = 110 bits (276), Expect = 8e-25
Identities = 53/105 (50%), Positives = 73/105 (69%)
Frame = +1
Query: 31 QRLTLRRRLSYNTNSNRRVKTRTPGGKLVYIYQKKKGTVPKCGDCKIALHGIKAMRPCER 210
QR+T RRRL+YNT SN+ +TPG + Y++ KK GT+P+CGD + L GI A+RP E
Sbjct: 3 QRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRpreF 62
Query: 211 SRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVEEDKLIAKLKKQ 345
+R+S QK V RAYGG + VK RI+R+FL+EE K++ + KQ
Sbjct: 63 ARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVKQKLKQ 107
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,086,645
Number of Sequences: 369166
Number of extensions: 727400
Number of successful extensions: 1660
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1648
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)