Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_K18
(253 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P87262|RL34A_YEAST 60S ribosomal protein L34-A 95 6e-20
sp|P40525|RL34B_YEAST 60S ribosomal protein L34-B 94 7e-20
sp|P45842|RL34_AEDAL 60S ribosomal protein L34 (L31) 83 2e-16
sp|Q9NB34|RL34_AEDTR 60S ribosomal protein L34 83 2e-16
sp|O42846|RL34A_SCHPO 60S ribosomal protein L34-A 74 8e-14
sp|Q9URT8|RL34B_SCHPO 60S ribosomal protein L34-B (60S ribo... 74 1e-13
sp|Q9D1R9|RL34_MOUSE 60S ribosomal protein L34 73 2e-13
sp|Q7ZWJ7|RL34_BRARE 60S ribosomal protein L34 73 2e-13
sp|Q90YT5|RL34_ICTPU 60S ribosomal protein L34 72 4e-13
sp|P49207|RL34_HUMAN 60S ribosomal protein L34 72 5e-13
>sp|P87262|RL34A_YEAST 60S ribosomal protein L34-A
Length = 121
Score = 94.7 bits (234), Expect = 6e-20
Identities = 43/71 (60%), Positives = 55/71 (77%)
Frame = +1
Query: 7 EFGTRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186
+ TRPKCGDC AL GI +RP + + VSK KTVSRAYGGSRC +CVK+RIIR+FL+E
Sbjct: 37 KLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERIIRAFLIE 96
Query: 187 EDKLIAKLKKQ 219
E K++ K+ K+
Sbjct: 97 EQKIVKKVVKE 107
>sp|P40525|RL34B_YEAST 60S ribosomal protein L34-B
Length = 121
Score = 94.4 bits (233), Expect = 7e-20
Identities = 42/71 (59%), Positives = 55/71 (77%)
Frame = +1
Query: 7 EFGTRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186
+ TRPKCGDC AL GI +RP + + VSK KTVSRAYGGSRC +CVK+RI+R+FL+E
Sbjct: 37 KLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERIVRAFLIE 96
Query: 187 EDKLIAKLKKQ 219
E K++ K+ K+
Sbjct: 97 EQKIVKKVVKE 107
>sp|P45842|RL34_AEDAL 60S ribosomal protein L34 (L31)
Length = 130
Score = 82.8 bits (203), Expect = 2e-16
Identities = 37/68 (54%), Positives = 49/68 (72%)
Frame = +1
Query: 16 TRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVEEDK 195
T PKCG CK L GIK RP ER R+ +R KTV+R +GG CH C+++RIIR+FL++E K
Sbjct: 40 TVPKCGQCKEKLSGIKPSRPSERPRMCRRLKTVTRTFGGVLCHRCLRERIIRAFLIDEQK 99
Query: 196 LIAKLKKQ 219
++ LK Q
Sbjct: 100 VVKVLKAQ 107
>sp|Q9NB34|RL34_AEDTR 60S ribosomal protein L34
Length = 139
Score = 82.8 bits (203), Expect = 2e-16
Identities = 37/68 (54%), Positives = 49/68 (72%)
Frame = +1
Query: 16 TRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVEEDK 195
T PKCG CK L GIK RP ER R+ +R KTV+R +GG CH C+++RIIR+FL++E K
Sbjct: 40 TVPKCGQCKEKLSGIKPSRPSERPRMCRRLKTVTRTFGGVLCHRCLRERIIRAFLIDEQK 99
Query: 196 LIAKLKKQ 219
++ LK Q
Sbjct: 100 VVKVLKAQ 107
>sp|O42846|RL34A_SCHPO 60S ribosomal protein L34-A
Length = 112
Score = 74.3 bits (181), Expect = 8e-14
Identities = 35/71 (49%), Positives = 49/71 (69%)
Frame = +1
Query: 7 EFGTRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186
+ GT P+CGD + L GI A+RP E +R+S +KTV RAYGG + VK RI+R+FL+E
Sbjct: 37 KLGTIPRCGDTGVPLQGIPALRpreFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIE 96
Query: 187 EDKLIAKLKKQ 219
E K++ + KQ
Sbjct: 97 EQKIVKQKLKQ 107
>sp|Q9URT8|RL34B_SCHPO 60S ribosomal protein L34-B (60S ribosomal protein L34-2)
Length = 111
Score = 73.6 bits (179), Expect = 1e-13
Identities = 35/71 (49%), Positives = 48/71 (67%)
Frame = +1
Query: 7 EFGTRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186
+ GT P+CGD + L GI A+RP E +R+S QK V RAYGG + VK RI+R+FL+E
Sbjct: 37 KLGTIPRCGDTGVPLQGIPALRpreFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIE 96
Query: 187 EDKLIAKLKKQ 219
E K++ + KQ
Sbjct: 97 EQKIVKQKLKQ 107
>sp|Q9D1R9|RL34_MOUSE 60S ribosomal protein L34
Length = 117
Score = 73.2 bits (178), Expect = 2e-13
Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Frame = +1
Query: 13 GTRPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186
G PK CG C L G++A+RP R+SK QK VSRAYGGS C CV+ RI R+FL+E
Sbjct: 39 GKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTQKHVSRAYGGSMCAKCVRDRIKRAFLIE 98
Query: 187 EDKLIAKLKK 216
E K++ K+ K
Sbjct: 99 EQKIVVKVLK 108
>sp|Q7ZWJ7|RL34_BRARE 60S ribosomal protein L34
Length = 117
Score = 72.8 bits (177), Expect = 2e-13
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Frame = +1
Query: 13 GTRPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186
G PK CG C L GI+A+RP R+SK +K VSRAYGGS C CV+ RI R+FL+E
Sbjct: 39 GKSPKSACGICPGRLRGIRAVRPQVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIE 98
Query: 187 EDKLIAKLKKQN*FTNK 237
E K++ K+ K T K
Sbjct: 99 EQKIVVKVLKAQAQTQK 115
>sp|Q90YT5|RL34_ICTPU 60S ribosomal protein L34
Length = 117
Score = 72.0 bits (175), Expect = 4e-13
Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Frame = +1
Query: 13 GTRPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186
G PK CG C L GI+A+RP R+SK +K VSRAYGGS C CV+ RI R+FL+E
Sbjct: 39 GKAPKSACGICPGRLRGIRAVRPQVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIE 98
Query: 187 EDKLIAKLKK 216
E K++ K+ K
Sbjct: 99 EQKIVVKVLK 108
>sp|P49207|RL34_HUMAN 60S ribosomal protein L34
Length = 117
Score = 71.6 bits (174), Expect = 5e-13
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Frame = +1
Query: 13 GTRPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186
G PK CG C L G++A+RP R+SK +K VSRAYGGS C CV+ RI R+FL+E
Sbjct: 39 GKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIE 98
Query: 187 EDKLIAKLKK 216
E K++ K+ K
Sbjct: 99 EQKIVVKVLK 108
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,628,140
Number of Sequences: 369166
Number of extensions: 384378
Number of successful extensions: 998
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)