Planarian EST Database


Dr_sW_005_K18

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_005_K18
         (253 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P87262|RL34A_YEAST  60S ribosomal protein L34-A                 95   6e-20
sp|P40525|RL34B_YEAST  60S ribosomal protein L34-B                 94   7e-20
sp|P45842|RL34_AEDAL  60S ribosomal protein L34 (L31)              83   2e-16
sp|Q9NB34|RL34_AEDTR  60S ribosomal protein L34                    83   2e-16
sp|O42846|RL34A_SCHPO  60S ribosomal protein L34-A                 74   8e-14
sp|Q9URT8|RL34B_SCHPO  60S ribosomal protein L34-B (60S ribo...    74   1e-13
sp|Q9D1R9|RL34_MOUSE  60S ribosomal protein L34                    73   2e-13
sp|Q7ZWJ7|RL34_BRARE  60S ribosomal protein L34                    73   2e-13
sp|Q90YT5|RL34_ICTPU  60S ribosomal protein L34                    72   4e-13
sp|P49207|RL34_HUMAN  60S ribosomal protein L34                    72   5e-13
>sp|P87262|RL34A_YEAST 60S ribosomal protein L34-A
          Length = 121

 Score = 94.7 bits (234), Expect = 6e-20
 Identities = 43/71 (60%), Positives = 55/71 (77%)
 Frame = +1

Query: 7   EFGTRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186
           +  TRPKCGDC  AL GI  +RP + + VSK  KTVSRAYGGSRC +CVK+RIIR+FL+E
Sbjct: 37  KLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERIIRAFLIE 96

Query: 187 EDKLIAKLKKQ 219
           E K++ K+ K+
Sbjct: 97  EQKIVKKVVKE 107
>sp|P40525|RL34B_YEAST 60S ribosomal protein L34-B
          Length = 121

 Score = 94.4 bits (233), Expect = 7e-20
 Identities = 42/71 (59%), Positives = 55/71 (77%)
 Frame = +1

Query: 7   EFGTRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186
           +  TRPKCGDC  AL GI  +RP + + VSK  KTVSRAYGGSRC +CVK+RI+R+FL+E
Sbjct: 37  KLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERIVRAFLIE 96

Query: 187 EDKLIAKLKKQ 219
           E K++ K+ K+
Sbjct: 97  EQKIVKKVVKE 107
>sp|P45842|RL34_AEDAL 60S ribosomal protein L34 (L31)
          Length = 130

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 37/68 (54%), Positives = 49/68 (72%)
 Frame = +1

Query: 16  TRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVEEDK 195
           T PKCG CK  L GIK  RP ER R+ +R KTV+R +GG  CH C+++RIIR+FL++E K
Sbjct: 40  TVPKCGQCKEKLSGIKPSRPSERPRMCRRLKTVTRTFGGVLCHRCLRERIIRAFLIDEQK 99

Query: 196 LIAKLKKQ 219
           ++  LK Q
Sbjct: 100 VVKVLKAQ 107
>sp|Q9NB34|RL34_AEDTR 60S ribosomal protein L34
          Length = 139

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 37/68 (54%), Positives = 49/68 (72%)
 Frame = +1

Query: 16  TRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVEEDK 195
           T PKCG CK  L GIK  RP ER R+ +R KTV+R +GG  CH C+++RIIR+FL++E K
Sbjct: 40  TVPKCGQCKEKLSGIKPSRPSERPRMCRRLKTVTRTFGGVLCHRCLRERIIRAFLIDEQK 99

Query: 196 LIAKLKKQ 219
           ++  LK Q
Sbjct: 100 VVKVLKAQ 107
>sp|O42846|RL34A_SCHPO 60S ribosomal protein L34-A
          Length = 112

 Score = 74.3 bits (181), Expect = 8e-14
 Identities = 35/71 (49%), Positives = 49/71 (69%)
 Frame = +1

Query: 7   EFGTRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186
           + GT P+CGD  + L GI A+RP E +R+S  +KTV RAYGG    + VK RI+R+FL+E
Sbjct: 37  KLGTIPRCGDTGVPLQGIPALRpreFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIE 96

Query: 187 EDKLIAKLKKQ 219
           E K++ +  KQ
Sbjct: 97  EQKIVKQKLKQ 107
>sp|Q9URT8|RL34B_SCHPO 60S ribosomal protein L34-B (60S ribosomal protein L34-2)
          Length = 111

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 35/71 (49%), Positives = 48/71 (67%)
 Frame = +1

Query: 7   EFGTRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186
           + GT P+CGD  + L GI A+RP E +R+S  QK V RAYGG    + VK RI+R+FL+E
Sbjct: 37  KLGTIPRCGDTGVPLQGIPALRpreFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIE 96

Query: 187 EDKLIAKLKKQ 219
           E K++ +  KQ
Sbjct: 97  EQKIVKQKLKQ 107
>sp|Q9D1R9|RL34_MOUSE 60S ribosomal protein L34
          Length = 117

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
 Frame = +1

Query: 13  GTRPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186
           G  PK  CG C   L G++A+RP    R+SK QK VSRAYGGS C  CV+ RI R+FL+E
Sbjct: 39  GKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTQKHVSRAYGGSMCAKCVRDRIKRAFLIE 98

Query: 187 EDKLIAKLKK 216
           E K++ K+ K
Sbjct: 99  EQKIVVKVLK 108
>sp|Q7ZWJ7|RL34_BRARE 60S ribosomal protein L34
          Length = 117

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
 Frame = +1

Query: 13  GTRPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186
           G  PK  CG C   L GI+A+RP    R+SK +K VSRAYGGS C  CV+ RI R+FL+E
Sbjct: 39  GKSPKSACGICPGRLRGIRAVRPQVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIE 98

Query: 187 EDKLIAKLKKQN*FTNK 237
           E K++ K+ K    T K
Sbjct: 99  EQKIVVKVLKAQAQTQK 115
>sp|Q90YT5|RL34_ICTPU 60S ribosomal protein L34
          Length = 117

 Score = 72.0 bits (175), Expect = 4e-13
 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
 Frame = +1

Query: 13  GTRPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186
           G  PK  CG C   L GI+A+RP    R+SK +K VSRAYGGS C  CV+ RI R+FL+E
Sbjct: 39  GKAPKSACGICPGRLRGIRAVRPQVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIE 98

Query: 187 EDKLIAKLKK 216
           E K++ K+ K
Sbjct: 99  EQKIVVKVLK 108
>sp|P49207|RL34_HUMAN 60S ribosomal protein L34
          Length = 117

 Score = 71.6 bits (174), Expect = 5e-13
 Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
 Frame = +1

Query: 13  GTRPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186
           G  PK  CG C   L G++A+RP    R+SK +K VSRAYGGS C  CV+ RI R+FL+E
Sbjct: 39  GKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIE 98

Query: 187 EDKLIAKLKK 216
           E K++ K+ K
Sbjct: 99  EQKIVVKVLK 108
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,628,140
Number of Sequences: 369166
Number of extensions: 384378
Number of successful extensions: 998
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)