Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_005_K18 (253 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P87262|RL34A_YEAST 60S ribosomal protein L34-A 95 6e-20 sp|P40525|RL34B_YEAST 60S ribosomal protein L34-B 94 7e-20 sp|P45842|RL34_AEDAL 60S ribosomal protein L34 (L31) 83 2e-16 sp|Q9NB34|RL34_AEDTR 60S ribosomal protein L34 83 2e-16 sp|O42846|RL34A_SCHPO 60S ribosomal protein L34-A 74 8e-14 sp|Q9URT8|RL34B_SCHPO 60S ribosomal protein L34-B (60S ribo... 74 1e-13 sp|Q9D1R9|RL34_MOUSE 60S ribosomal protein L34 73 2e-13 sp|Q7ZWJ7|RL34_BRARE 60S ribosomal protein L34 73 2e-13 sp|Q90YT5|RL34_ICTPU 60S ribosomal protein L34 72 4e-13 sp|P49207|RL34_HUMAN 60S ribosomal protein L34 72 5e-13
>sp|P87262|RL34A_YEAST 60S ribosomal protein L34-A Length = 121 Score = 94.7 bits (234), Expect = 6e-20 Identities = 43/71 (60%), Positives = 55/71 (77%) Frame = +1 Query: 7 EFGTRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186 + TRPKCGDC AL GI +RP + + VSK KTVSRAYGGSRC +CVK+RIIR+FL+E Sbjct: 37 KLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERIIRAFLIE 96 Query: 187 EDKLIAKLKKQ 219 E K++ K+ K+ Sbjct: 97 EQKIVKKVVKE 107
>sp|P40525|RL34B_YEAST 60S ribosomal protein L34-B Length = 121 Score = 94.4 bits (233), Expect = 7e-20 Identities = 42/71 (59%), Positives = 55/71 (77%) Frame = +1 Query: 7 EFGTRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186 + TRPKCGDC AL GI +RP + + VSK KTVSRAYGGSRC +CVK+RI+R+FL+E Sbjct: 37 KLATRPKCGDCGSALQGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERIVRAFLIE 96 Query: 187 EDKLIAKLKKQ 219 E K++ K+ K+ Sbjct: 97 EQKIVKKVVKE 107
>sp|P45842|RL34_AEDAL 60S ribosomal protein L34 (L31) Length = 130 Score = 82.8 bits (203), Expect = 2e-16 Identities = 37/68 (54%), Positives = 49/68 (72%) Frame = +1 Query: 16 TRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVEEDK 195 T PKCG CK L GIK RP ER R+ +R KTV+R +GG CH C+++RIIR+FL++E K Sbjct: 40 TVPKCGQCKEKLSGIKPSRPSERPRMCRRLKTVTRTFGGVLCHRCLRERIIRAFLIDEQK 99 Query: 196 LIAKLKKQ 219 ++ LK Q Sbjct: 100 VVKVLKAQ 107
>sp|Q9NB34|RL34_AEDTR 60S ribosomal protein L34 Length = 139 Score = 82.8 bits (203), Expect = 2e-16 Identities = 37/68 (54%), Positives = 49/68 (72%) Frame = +1 Query: 16 TRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVEEDK 195 T PKCG CK L GIK RP ER R+ +R KTV+R +GG CH C+++RIIR+FL++E K Sbjct: 40 TVPKCGQCKEKLSGIKPSRPSERPRMCRRLKTVTRTFGGVLCHRCLRERIIRAFLIDEQK 99 Query: 196 LIAKLKKQ 219 ++ LK Q Sbjct: 100 VVKVLKAQ 107
>sp|O42846|RL34A_SCHPO 60S ribosomal protein L34-A Length = 112 Score = 74.3 bits (181), Expect = 8e-14 Identities = 35/71 (49%), Positives = 49/71 (69%) Frame = +1 Query: 7 EFGTRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186 + GT P+CGD + L GI A+RP E +R+S +KTV RAYGG + VK RI+R+FL+E Sbjct: 37 KLGTIPRCGDTGVPLQGIPALRpreFARLSHNKKTVQRAYGGCLSANAVKDRIVRAFLIE 96 Query: 187 EDKLIAKLKKQ 219 E K++ + KQ Sbjct: 97 EQKIVKQKLKQ 107
>sp|Q9URT8|RL34B_SCHPO 60S ribosomal protein L34-B (60S ribosomal protein L34-2) Length = 111 Score = 73.6 bits (179), Expect = 1e-13 Identities = 35/71 (49%), Positives = 48/71 (67%) Frame = +1 Query: 7 EFGTRPKCGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186 + GT P+CGD + L GI A+RP E +R+S QK V RAYGG + VK RI+R+FL+E Sbjct: 37 KLGTIPRCGDTGVPLQGIPALRpreFARLSHNQKKVQRAYGGCLSANAVKDRIVRAFLIE 96 Query: 187 EDKLIAKLKKQ 219 E K++ + KQ Sbjct: 97 EQKIVKQKLKQ 107
>sp|Q9D1R9|RL34_MOUSE 60S ribosomal protein L34 Length = 117 Score = 73.2 bits (178), Expect = 2e-13 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 2/70 (2%) Frame = +1 Query: 13 GTRPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186 G PK CG C L G++A+RP R+SK QK VSRAYGGS C CV+ RI R+FL+E Sbjct: 39 GKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTQKHVSRAYGGSMCAKCVRDRIKRAFLIE 98 Query: 187 EDKLIAKLKK 216 E K++ K+ K Sbjct: 99 EQKIVVKVLK 108
>sp|Q7ZWJ7|RL34_BRARE 60S ribosomal protein L34 Length = 117 Score = 72.8 bits (177), Expect = 2e-13 Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%) Frame = +1 Query: 13 GTRPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186 G PK CG C L GI+A+RP R+SK +K VSRAYGGS C CV+ RI R+FL+E Sbjct: 39 GKSPKSACGICPGRLRGIRAVRPQVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIE 98 Query: 187 EDKLIAKLKKQN*FTNK 237 E K++ K+ K T K Sbjct: 99 EQKIVVKVLKAQAQTQK 115
>sp|Q90YT5|RL34_ICTPU 60S ribosomal protein L34 Length = 117 Score = 72.0 bits (175), Expect = 4e-13 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 2/70 (2%) Frame = +1 Query: 13 GTRPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186 G PK CG C L GI+A+RP R+SK +K VSRAYGGS C CV+ RI R+FL+E Sbjct: 39 GKAPKSACGICPGRLRGIRAVRPQVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIE 98 Query: 187 EDKLIAKLKK 216 E K++ K+ K Sbjct: 99 EQKIVVKVLK 108
>sp|P49207|RL34_HUMAN 60S ribosomal protein L34 Length = 117 Score = 71.6 bits (174), Expect = 5e-13 Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 2/70 (2%) Frame = +1 Query: 13 GTRPK--CGDCKIALHGIKAMRPCERSRVSKRQKTVSRAYGGSRCHSCVKKRIIRSFLVE 186 G PK CG C L G++A+RP R+SK +K VSRAYGGS C CV+ RI R+FL+E Sbjct: 39 GKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIE 98 Query: 187 EDKLIAKLKK 216 E K++ K+ K Sbjct: 99 EQKIVVKVLK 108
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,628,140 Number of Sequences: 369166 Number of extensions: 384378 Number of successful extensions: 998 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 988 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 995 length of database: 68,354,980 effective HSP length: 54 effective length of database: 58,379,290 effective search space used: 1692999410 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)