Planaria EST Database

DrC_00119

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00119
         (952 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41997|YKC6_CAEEL  Hypothetical protein B0280.6 in chromo...    49   3e-05
sp|O35923|BRCA2_RAT  Breast cancer type 2 susceptibility pro...    32   3.4  
sp|Q01634|IDUA_CANFA  Alpha-L-iduronidase precursor                30   7.7  
sp|P09201|F16P_YEAST  Fructose-1,6-bisphosphatase (D-fructos...    30   7.7  
sp|O88382|AIP1_RAT  Atrophin-1-interacting protein 1 (Membra...    30   7.7  
sp|Q9WVQ1|AIP1_MOUSE  Atrophin-1-interacting protein 1 (Memb...    30   7.7  
sp|Q86UL8|AIP1_HUMAN  Atrophin-1-interacting protein 1 (Atro...    30   7.7  

>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
          Length = 252

 Score = 48.5 bits (114), Expect = 3e-05
 Identities = 23/62 (37%), Positives = 34/62 (54%)
 Frame = +3

Query: 609 LLHDNARPHTPKTTVDNLTSLDLAVPPYVAYSPNMVPSDYYLLKSVQYYFDDSQFKNIED 788
           L+  + +PH  K T   L  L   V P+  YSP++ P+DY+L  S+  Y  D QF + E 
Sbjct: 152 LVTGDEKPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEH 211

Query: 789 VK 794
           +K
Sbjct: 212 LK 213

>sp|O35923|BRCA2_RAT Breast cancer type 2 susceptibility protein homolog (Fanconi anemia
            group D1 protein homolog)
          Length = 3343

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 10   PYNYVTILYLSPSHLHLMVYQFQINLGRSILPRI 111
            P     ++YLS   LHL+V +F I+L   I PR+
Sbjct: 3012 PIGLAPLVYLSDECLHLLVVKFGIDLNEDIKPRV 3045

>sp|Q01634|IDUA_CANFA Alpha-L-iduronidase precursor
          Length = 655

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
 Frame = +3

Query: 483 HYEFMKHGETI--TSETYRNQLSCLQEVLEKNRPFYGTGT-------RL--VILLHDNAR 629
           H E+ + G  +  T+E +R   +    V E  RPF  +G        RL  ++LLH  AR
Sbjct: 483 HGEWQRLGRPVFPTAEEFRRMRAAEDPVAEAPRPFPASGRLTLSVELRLPSLLLLHVCAR 542

Query: 630 PHTPKTTVDNLTSLDL 677
           P  P   V  L +L L
Sbjct: 543 PEKPPGPVTRLRALPL 558

>sp|P09201|F16P_YEAST Fructose-1,6-bisphosphatase (D-fructose-1,6-bisphosphate
           1-phosphohydrolase) (FBPase)
          Length = 348

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = +3

Query: 516 TSETYRNQLSCLQEVLEKNRPFYGTGTRLVILLHDNARPHTPKTTVDN--LTSLDLAVPP 689
           +S T  + L C +E++      YG+ T LV+ L D     T  T +    LT  +L +PP
Sbjct: 155 SSGTINDVLRCGKEMVAACYAMYGSSTHLVLTLGDGVDGFTLDTNLGEFILTHPNLRIPP 214

Query: 690 YVA-YSPN 710
             A YS N
Sbjct: 215 QKAIYSIN 222

>sp|O88382|AIP1_RAT Atrophin-1-interacting protein 1 (Membrane-associated guanylate
           kinase inverted-2) (MAGI-2) (Synaptic scaffolding
           molecule) (S-SCAM)
          Length = 1277

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 295 PDFRKRIFCTRSLQGMRNGYIMTTLNKKNLGF 390
           P FR++   TR    ++  ++ TTL K N+GF
Sbjct: 405 PGFREKPLFTRDASQLKGTFLSTTLKKSNMGF 436

>sp|Q9WVQ1|AIP1_MOUSE Atrophin-1-interacting protein 1 (Membrane-associated guanylate
           kinase inverted-2) (MAGI-2) (Activin
           receptor-interacting protein 1) (Acvrip1)
          Length = 1275

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 295 PDFRKRIFCTRSLQGMRNGYIMTTLNKKNLGF 390
           P FR++   TR    ++  ++ TTL K N+GF
Sbjct: 404 PGFREKPLFTRDASQLKGTFLSTTLKKSNMGF 435

>sp|Q86UL8|AIP1_HUMAN Atrophin-1-interacting protein 1 (Atrophin-1-interacting protein A)
           (Membrane-associated guanylate kinase inverted-2)
           (MAGI-2)
          Length = 1455

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 295 PDFRKRIFCTRSLQGMRNGYIMTTLNKKNLGF 390
           P FR++   TR    ++  ++ TTL K N+GF
Sbjct: 405 PGFREKPLFTRDASQLKGTFLSTTLKKSNMGF 436

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,462,000
Number of Sequences: 369166
Number of extensions: 2263801
Number of successful extensions: 5078
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5076
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9895030780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00119

  1. Dr_sW_003_P20
  2. Dr_sW_020_H01