Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_P20
(931 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromo... 49 3e-05
sp|O35923|BRCA2_RAT Breast cancer type 2 susceptibility pro... 32 3.3
sp|Q01634|IDUA_CANFA Alpha-L-iduronidase precursor 30 7.4
sp|P09201|F16P_YEAST Fructose-1,6-bisphosphatase (D-fructos... 30 7.4
sp|O88382|AIP1_RAT Atrophin-1-interacting protein 1 (Membra... 30 7.4
sp|Q9WVQ1|AIP1_MOUSE Atrophin-1-interacting protein 1 (Memb... 30 7.4
sp|Q86UL8|AIP1_HUMAN Atrophin-1-interacting protein 1 (Atro... 30 7.4
sp|Q58907|RGYR_METJA Reverse gyrase [Includes: Helicase ; T... 30 9.7
sp|Q9ZC83|DCUP_RICPR Uroporphyrinogen decarboxylase (URO-D)... 30 9.7
>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
Length = 252
Score = 48.5 bits (114), Expect = 3e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +3
Query: 609 LLHDNARPHTPKTTVDNLTSLDLAVPPYVAYSPNMVPSDYYLLKSVQYYFDDSQFKNIED 788
L+ + +PH K T L L V P+ YSP++ P+DY+L S+ Y D QF + E
Sbjct: 152 LVTGDEKPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEH 211
Query: 789 VK 794
+K
Sbjct: 212 LK 213
>sp|O35923|BRCA2_RAT Breast cancer type 2 susceptibility protein homolog (Fanconi anemia
group D1 protein homolog)
Length = 3343
Score = 31.6 bits (70), Expect = 3.3
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 10 PYNYVTILYLSPSHLHLMVYQFQINLGRSILPRI 111
P ++YLS LHL+V +F I+L I PR+
Sbjct: 3012 PIGLAPLVYLSDECLHLLVVKFGIDLNEDIKPRV 3045
>sp|Q01634|IDUA_CANFA Alpha-L-iduronidase precursor
Length = 655
Score = 30.4 bits (67), Expect = 7.4
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Frame = +3
Query: 483 HYEFMKHGETI--TSETYRNQLSCLQEVLEKNRPFYGTGT-------RL--VILLHDNAR 629
H E+ + G + T+E +R + V E RPF +G RL ++LLH AR
Sbjct: 483 HGEWQRLGRPVFPTAEEFRRMRAAEDPVAEAPRPFPASGRLTLSVELRLPSLLLLHVCAR 542
Query: 630 PHTPKTTVDNLTSLDL 677
P P V L +L L
Sbjct: 543 PEKPPGPVTRLRALPL 558
>sp|P09201|F16P_YEAST Fructose-1,6-bisphosphatase (D-fructose-1,6-bisphosphate
1-phosphohydrolase) (FBPase)
Length = 348
Score = 30.4 bits (67), Expect = 7.4
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +3
Query: 516 TSETYRNQLSCLQEVLEKNRPFYGTGTRLVILLHDNARPHTPKTTVDN--LTSLDLAVPP 689
+S T + L C +E++ YG+ T LV+ L D T T + LT +L +PP
Sbjct: 155 SSGTINDVLRCGKEMVAACYAMYGSSTHLVLTLGDGVDGFTLDTNLGEFILTHPNLRIPP 214
Query: 690 YVA-YSPN 710
A YS N
Sbjct: 215 QKAIYSIN 222
>sp|O88382|AIP1_RAT Atrophin-1-interacting protein 1 (Membrane-associated guanylate
kinase inverted-2) (MAGI-2) (Synaptic scaffolding
molecule) (S-SCAM)
Length = 1277
Score = 30.4 bits (67), Expect = 7.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 295 PDFRKRIFCTRSLQGMRNGYIMTTLNKKNLGF 390
P FR++ TR ++ ++ TTL K N+GF
Sbjct: 405 PGFREKPLFTRDASQLKGTFLSTTLKKSNMGF 436
>sp|Q9WVQ1|AIP1_MOUSE Atrophin-1-interacting protein 1 (Membrane-associated guanylate
kinase inverted-2) (MAGI-2) (Activin
receptor-interacting protein 1) (Acvrip1)
Length = 1275
Score = 30.4 bits (67), Expect = 7.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 295 PDFRKRIFCTRSLQGMRNGYIMTTLNKKNLGF 390
P FR++ TR ++ ++ TTL K N+GF
Sbjct: 404 PGFREKPLFTRDASQLKGTFLSTTLKKSNMGF 435
>sp|Q86UL8|AIP1_HUMAN Atrophin-1-interacting protein 1 (Atrophin-1-interacting protein A)
(Membrane-associated guanylate kinase inverted-2)
(MAGI-2)
Length = 1455
Score = 30.4 bits (67), Expect = 7.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 295 PDFRKRIFCTRSLQGMRNGYIMTTLNKKNLGF 390
P FR++ TR ++ ++ TTL K N+GF
Sbjct: 405 PGFREKPLFTRDASQLKGTFLSTTLKKSNMGF 436
>sp|Q58907|RGYR_METJA Reverse gyrase [Includes: Helicase ; Topoisomerase ] [Contains: Mja
r-Gyr intein]
Length = 1613
Score = 30.0 bits (66), Expect = 9.7
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Frame = +3
Query: 309 KDFLHKIVTGDEKWIYYDNPKQKESWVYAGQPYSLIVKRNIH*AK--VLLCIC*DYLRVV 482
K+FL KIV GD I + K+ E+ Y G Y L +K N + V+ C Y R
Sbjct: 1312 KEFLEKIVNGD---ISFVRVKKVENIPYDGYVYDLSIKHNQNFISNGVISHNC-TYHRTS 1367
Query: 483 HYEFMKHGETITSETYRNQLSCLQEVLEKNRPFYGTGTRLVILLHDNARPHTPKTT 650
G + E + L+ L++ L KNR ++ G H+ RP P T
Sbjct: 1368 STRVSLDGMRVAREYLK--LNNLEDYL-KNREYFMEGA------HECIRPTKPMNT 1414
>sp|Q9ZC83|DCUP_RICPR Uroporphyrinogen decarboxylase (URO-D) (UPD)
Length = 345
Score = 30.0 bits (66), Expect = 9.7
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 73 FQINLGRSILPRIYPDTVELKTAVTNLHIHK-CNKTF 180
F NLG ILP +P+ VE T L+ K N TF
Sbjct: 309 FIFNLGHGILPETHPENVEFLTQYVRLYEQKNSNSTF 345
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,019,279
Number of Sequences: 369166
Number of extensions: 2232901
Number of successful extensions: 5097
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5095
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9558791870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)