Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_H01
(705 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromo... 49 2e-05
sp|Q01634|IDUA_CANFA Alpha-L-iduronidase precursor 30 4.8
sp|P09201|F16P_YEAST Fructose-1,6-bisphosphatase (D-fructos... 30 4.8
sp|O88382|AIP1_RAT Atrophin-1-interacting protein 1 (Membra... 30 4.8
sp|Q9WVQ1|AIP1_MOUSE Atrophin-1-interacting protein 1 (Memb... 30 4.8
sp|Q86UL8|AIP1_HUMAN Atrophin-1-interacting protein 1 (Atro... 30 4.8
sp|Q58907|RGYR_METJA Reverse gyrase [Includes: Helicase ; T... 30 6.2
sp|P38298|YPC1_YEAST Alkaline ceramidase YPC1 30 8.2
sp|Q5H8C1|FREM1_HUMAN FRAS1-related extracellular matrix pr... 30 8.2
sp|Q9RNZ1|ISPDF_ZYMMO IspD/ispF bifunctional enzyme [Includ... 30 8.2
>sp|P41997|YKC6_CAEEL Hypothetical protein B0280.6 in chromosome III
Length = 252
Score = 48.5 bits (114), Expect = 2e-05
Identities = 23/62 (37%), Positives = 34/62 (54%)
Frame = +2
Query: 362 LLHDNARPHTPKTTVDNLTSLDLAVPPYVAYSPNMVPSDYYLLKSVQYYFDDSQFKNIED 541
L+ + +PH K T L L V P+ YSP++ P+DY+L S+ Y D QF + E
Sbjct: 152 LVTGDEKPHVAKKTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDDEEH 211
Query: 542 VK 547
+K
Sbjct: 212 LK 213
>sp|Q01634|IDUA_CANFA Alpha-L-iduronidase precursor
Length = 655
Score = 30.4 bits (67), Expect = 4.8
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Frame = +2
Query: 236 HYEFMKHGETI--TSETYRNQLSCLQEVLEKNRPFYGTGT-------RL--VILLHDNAR 382
H E+ + G + T+E +R + V E RPF +G RL ++LLH AR
Sbjct: 483 HGEWQRLGRPVFPTAEEFRRMRAAEDPVAEAPRPFPASGRLTLSVELRLPSLLLLHVCAR 542
Query: 383 PHTPKTTVDNLTSLDL 430
P P V L +L L
Sbjct: 543 PEKPPGPVTRLRALPL 558
>sp|P09201|F16P_YEAST Fructose-1,6-bisphosphatase (D-fructose-1,6-bisphosphate
1-phosphohydrolase) (FBPase)
Length = 348
Score = 30.4 bits (67), Expect = 4.8
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +2
Query: 269 TSETYRNQLSCLQEVLEKNRPFYGTGTRLVILLHDNARPHTPKTTVDN--LTSLDLAVPP 442
+S T + L C +E++ YG+ T LV+ L D T T + LT +L +PP
Sbjct: 155 SSGTINDVLRCGKEMVAACYAMYGSSTHLVLTLGDGVDGFTLDTNLGEFILTHPNLRIPP 214
Query: 443 YVA-YSPN 463
A YS N
Sbjct: 215 QKAIYSIN 222
>sp|O88382|AIP1_RAT Atrophin-1-interacting protein 1 (Membrane-associated guanylate
kinase inverted-2) (MAGI-2) (Synaptic scaffolding
molecule) (S-SCAM)
Length = 1277
Score = 30.4 bits (67), Expect = 4.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 48 PDFRKRIFCTRSLQGMRNGYIMTTLNKKNLGF 143
P FR++ TR ++ ++ TTL K N+GF
Sbjct: 405 PGFREKPLFTRDASQLKGTFLSTTLKKSNMGF 436
>sp|Q9WVQ1|AIP1_MOUSE Atrophin-1-interacting protein 1 (Membrane-associated guanylate
kinase inverted-2) (MAGI-2) (Activin
receptor-interacting protein 1) (Acvrip1)
Length = 1275
Score = 30.4 bits (67), Expect = 4.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 48 PDFRKRIFCTRSLQGMRNGYIMTTLNKKNLGF 143
P FR++ TR ++ ++ TTL K N+GF
Sbjct: 404 PGFREKPLFTRDASQLKGTFLSTTLKKSNMGF 435
>sp|Q86UL8|AIP1_HUMAN Atrophin-1-interacting protein 1 (Atrophin-1-interacting protein A)
(Membrane-associated guanylate kinase inverted-2)
(MAGI-2)
Length = 1455
Score = 30.4 bits (67), Expect = 4.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 48 PDFRKRIFCTRSLQGMRNGYIMTTLNKKNLGF 143
P FR++ TR ++ ++ TTL K N+GF
Sbjct: 405 PGFREKPLFTRDASQLKGTFLSTTLKKSNMGF 436
>sp|Q58907|RGYR_METJA Reverse gyrase [Includes: Helicase ; Topoisomerase ] [Contains: Mja
r-Gyr intein]
Length = 1613
Score = 30.0 bits (66), Expect = 6.2
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Frame = +2
Query: 62 KDFLHKIVTGDEKWIYYDNPKQKESWVYAGQPYSLIVKRNIH*AK--VLLCIC*DYLRVV 235
K+FL KIV GD I + K+ E+ Y G Y L +K N + V+ C Y R
Sbjct: 1312 KEFLEKIVNGD---ISFVRVKKVENIPYDGYVYDLSIKHNQNFISNGVISHNC-TYHRTS 1367
Query: 236 HYEFMKHGETITSETYRNQLSCLQEVLEKNRPFYGTGTRLVILLHDNARPHTPKTT 403
G + E + L+ L++ L KNR ++ G H+ RP P T
Sbjct: 1368 STRVSLDGMRVAREYLK--LNNLEDYL-KNREYFMEGA------HECIRPTKPMNT 1414
>sp|P38298|YPC1_YEAST Alkaline ceramidase YPC1
Length = 316
Score = 29.6 bits (65), Expect = 8.2
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -2
Query: 443 MGELPSLKRLDCPLWSLACEVERC--HGEELRA*FQYHKMVYFFQELLEGNSIGFGM 279
+ ELP + + P WSL CE + +G+ HK V F+++ G IG +
Sbjct: 97 LDELPMIYAMCIPTWSLVCEAKEALLNGDN-------HKKVPLFEQIFIGVIIGLAV 146
>sp|Q5H8C1|FREM1_HUMAN FRAS1-related extracellular matrix protein 1 precursor (QBRICK
protein)
Length = 2179
Score = 29.6 bits (65), Expect = 8.2
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = +2
Query: 392 PKTTVDNLTSLDLAVPPYVAYSPNMVPSDYYLLKSVQYYFDDSQFKNIEDVKN*F*ITMN 571
P T D+L + L PP Y N++PS + ++ D Q+K++ N F I
Sbjct: 1053 PDTAADDLEFV-LVSPPQFGYLENILPSVGFEKSNIGISIDSFQWKDM----NAFHINYV 1107
Query: 572 QNRHL 586
Q+RHL
Sbjct: 1108 QSRHL 1112
>sp|Q9RNZ1|ISPDF_ZYMMO IspD/ispF bifunctional enzyme [Includes: 2-C-methyl-D-erythritol
4-phosphate cytidylyltransferase
(4-diphosphocytidyl-2C-methyl-D-erythritol synthase)
(MEP cytidylyltransferase) (MCT);
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
(MECPS) (MECDP-synthase)]
Length = 386
Score = 29.6 bits (65), Expect = 8.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 359 ILLHDNARPHTPKTTVDNL 415
+L+HD ARP PKT +D L
Sbjct: 103 VLIHDAARPFLPKTVIDRL 121
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,664,270
Number of Sequences: 369166
Number of extensions: 1705724
Number of successful extensions: 3840
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3839
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6170718545
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)