Planaria EST Database

DrC_00107

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00107
         (429 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P13868|CALM1_SOLTU  Calmodulin-1 (CaM-1)                        34   0.11 
sp|P25854|CALM1_ARATH  Calmodulin-1/4 (CaM-1/4)                    33   0.33 
sp|P27161|CALM_LYCES  Calmodulin (CaM)                             33   0.33 
sp|P17928|CALM_MEDSA  Calmodulin (CaM)                             33   0.33 
sp|P27163|CALM2_PETHY  Calmodulin-2 (CaM-2)                        33   0.33 
sp|P04464|CALM_WHEAT  Calmodulin (CaM)                             32   0.43 
sp|P04353|CALM_SPIOL  Calmodulin (CaM)                             32   0.43 
sp|Q03509|CALM6_ARATH  Calmodulin-6 (CaM-6)                        32   0.73 
sp|Q7DMN9|CALM5_SOLTU  Calmodulin-5/6/7/8 (CaM-5/6/7/8)            32   0.73 
sp|P93087|CALM_CAPAN  Calmodulin (CaM)                             32   0.73 

>sp|P13868|CALM1_SOLTU Calmodulin-1 (CaM-1)
          Length = 149

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +3

Query: 24  EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
           E+  + K AFS  DK G+GC+   E+  + R     + Q+   + L   I+ AD D    
Sbjct: 8   EQIAEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMISEADADQNGT 63

Query: 195 IDYSHFL 215
           ID+  FL
Sbjct: 64  IDFPEFL 70

>sp|P25854|CALM1_ARATH Calmodulin-1/4 (CaM-1/4)
          Length = 149

 Score = 32.7 bits (73), Expect = 0.33
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 24  EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
           E+ ++ K AFS  DK G+GC+   E+  + R     + Q+   + L   I   D D    
Sbjct: 8   EQISEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMINEVDADGNGT 63

Query: 195 IDYSHFL 215
           ID+  FL
Sbjct: 64  IDFPEFL 70

>sp|P27161|CALM_LYCES Calmodulin (CaM)
          Length = 149

 Score = 32.7 bits (73), Expect = 0.33
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 24  EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
           E+  + K AFS  DK G+GC+   E+  + R     + Q+   + L   I+  D D    
Sbjct: 8   EQIAEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMISEVDADQNGT 63

Query: 195 IDYSHFL 215
           ID+  FL
Sbjct: 64  IDFPEFL 70

>sp|P17928|CALM_MEDSA Calmodulin (CaM)
          Length = 149

 Score = 32.7 bits (73), Expect = 0.33
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 24  EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
           E+ ++ K AFS  DK G+GC+   E+  + R     + Q+   + L   I   D D    
Sbjct: 8   EQISEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMINEVDADGNGT 63

Query: 195 IDYSHFL 215
           ID+  FL
Sbjct: 64  IDFPEFL 70

>sp|P27163|CALM2_PETHY Calmodulin-2 (CaM-2)
          Length = 149

 Score = 32.7 bits (73), Expect = 0.33
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 24  EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
           E+  + K AFS  DK G+GC+   E+  + R     + Q+   + L   I+  D D    
Sbjct: 8   EQIAEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMISEVDADQNGT 63

Query: 195 IDYSHFL 215
           ID+  FL
Sbjct: 64  IDFPEFL 70

>sp|P04464|CALM_WHEAT Calmodulin (CaM)
          Length = 148

 Score = 32.3 bits (72), Expect = 0.43
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +3

Query: 24  EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
           E+  + K AFS  DK G+GC+   E+  + R     + Q+   + L   I   D D    
Sbjct: 7   EQIAEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMINEVDADGNGT 62

Query: 195 IDYSHFL 215
           ID+  FL
Sbjct: 63  IDFPEFL 69

>sp|P04353|CALM_SPIOL Calmodulin (CaM)
          Length = 148

 Score = 32.3 bits (72), Expect = 0.43
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +3

Query: 24  EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
           E+  + K AFS  DK G+GC+   E+  + R     + Q+   + L   I   D D    
Sbjct: 7   EQIAEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMINEVDADGNGT 62

Query: 195 IDYSHFL 215
           ID+  FL
Sbjct: 63  IDFPEFL 69

>sp|Q03509|CALM6_ARATH Calmodulin-6 (CaM-6)
          Length = 149

 Score = 31.6 bits (70), Expect = 0.73
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 24  EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
           ++ ++ K AFS  DK G+GC+   E+  + R     + Q+   + L   I   D D    
Sbjct: 8   DQISEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMINEVDADGNGT 63

Query: 195 IDYSHFL 215
           ID+  FL
Sbjct: 64  IDFPEFL 70

>sp|Q7DMN9|CALM5_SOLTU Calmodulin-5/6/7/8 (CaM-5/6/7/8)
          Length = 149

 Score = 31.6 bits (70), Expect = 0.73
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 24  EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
           ++ ++ K AFS  DK G+GC+   E+  + R     + Q+   + L   I   D D    
Sbjct: 8   DQISEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMINEVDADGNGT 63

Query: 195 IDYSHFL 215
           ID+  FL
Sbjct: 64  IDFPEFL 70

>sp|P93087|CALM_CAPAN Calmodulin (CaM)
          Length = 149

 Score = 31.6 bits (70), Expect = 0.73
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +3

Query: 24  EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
           ++ ++ K AFS  DK G+GC+   E+  + R     + Q+   + L   I   D D    
Sbjct: 8   DQISEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMINEVDADGNGT 63

Query: 195 IDYSHFL 215
           ID+  FL
Sbjct: 64  IDFPEFL 70

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,037,966
Number of Sequences: 369166
Number of extensions: 777072
Number of successful extensions: 2036
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2036
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2095022160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00107

  1. Dr_sW_004_E23
  2. Dr_sW_003_M03