Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_M03
(429 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13868|CALM1_SOLTU Calmodulin-1 (CaM-1) 34 0.11
sp|P25854|CALM1_ARATH Calmodulin-1/4 (CaM-1/4) 33 0.33
sp|P27161|CALM_LYCES Calmodulin (CaM) 33 0.33
sp|P17928|CALM_MEDSA Calmodulin (CaM) 33 0.33
sp|P27163|CALM2_PETHY Calmodulin-2 (CaM-2) 33 0.33
sp|P04464|CALM_WHEAT Calmodulin (CaM) 32 0.43
sp|P04353|CALM_SPIOL Calmodulin (CaM) 32 0.43
sp|Q03509|CALM6_ARATH Calmodulin-6 (CaM-6) 32 0.73
sp|Q7DMN9|CALM5_SOLTU Calmodulin-5/6/7/8 (CaM-5/6/7/8) 32 0.73
sp|P93087|CALM_CAPAN Calmodulin (CaM) 32 0.73
>sp|P13868|CALM1_SOLTU Calmodulin-1 (CaM-1)
Length = 149
Score = 34.3 bits (77), Expect = 0.11
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = +3
Query: 24 EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
E+ + K AFS DK G+GC+ E+ + R + Q+ + L I+ AD D
Sbjct: 8 EQIAEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMISEADADQNGT 63
Query: 195 IDYSHFL 215
ID+ FL
Sbjct: 64 IDFPEFL 70
>sp|P25854|CALM1_ARATH Calmodulin-1/4 (CaM-1/4)
Length = 149
Score = 32.7 bits (73), Expect = 0.33
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 24 EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
E+ ++ K AFS DK G+GC+ E+ + R + Q+ + L I D D
Sbjct: 8 EQISEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMINEVDADGNGT 63
Query: 195 IDYSHFL 215
ID+ FL
Sbjct: 64 IDFPEFL 70
>sp|P27161|CALM_LYCES Calmodulin (CaM)
Length = 149
Score = 32.7 bits (73), Expect = 0.33
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 24 EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
E+ + K AFS DK G+GC+ E+ + R + Q+ + L I+ D D
Sbjct: 8 EQIAEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMISEVDADQNGT 63
Query: 195 IDYSHFL 215
ID+ FL
Sbjct: 64 IDFPEFL 70
>sp|P17928|CALM_MEDSA Calmodulin (CaM)
Length = 149
Score = 32.7 bits (73), Expect = 0.33
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 24 EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
E+ ++ K AFS DK G+GC+ E+ + R + Q+ + L I D D
Sbjct: 8 EQISEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMINEVDADGNGT 63
Query: 195 IDYSHFL 215
ID+ FL
Sbjct: 64 IDFPEFL 70
>sp|P27163|CALM2_PETHY Calmodulin-2 (CaM-2)
Length = 149
Score = 32.7 bits (73), Expect = 0.33
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 24 EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
E+ + K AFS DK G+GC+ E+ + R + Q+ + L I+ D D
Sbjct: 8 EQIAEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMISEVDADQNGT 63
Query: 195 IDYSHFL 215
ID+ FL
Sbjct: 64 IDFPEFL 70
>sp|P04464|CALM_WHEAT Calmodulin (CaM)
Length = 148
Score = 32.3 bits (72), Expect = 0.43
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 24 EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
E+ + K AFS DK G+GC+ E+ + R + Q+ + L I D D
Sbjct: 7 EQIAEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMINEVDADGNGT 62
Query: 195 IDYSHFL 215
ID+ FL
Sbjct: 63 IDFPEFL 69
>sp|P04353|CALM_SPIOL Calmodulin (CaM)
Length = 148
Score = 32.3 bits (72), Expect = 0.43
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = +3
Query: 24 EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
E+ + K AFS DK G+GC+ E+ + R + Q+ + L I D D
Sbjct: 7 EQIAEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMINEVDADGNGT 62
Query: 195 IDYSHFL 215
ID+ FL
Sbjct: 63 IDFPEFL 69
>sp|Q03509|CALM6_ARATH Calmodulin-6 (CaM-6)
Length = 149
Score = 31.6 bits (70), Expect = 0.73
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 24 EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
++ ++ K AFS DK G+GC+ E+ + R + Q+ + L I D D
Sbjct: 8 DQISEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMINEVDADGNGT 63
Query: 195 IDYSHFL 215
ID+ FL
Sbjct: 64 IDFPEFL 70
>sp|Q7DMN9|CALM5_SOLTU Calmodulin-5/6/7/8 (CaM-5/6/7/8)
Length = 149
Score = 31.6 bits (70), Expect = 0.73
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 24 EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
++ ++ K AFS DK G+GC+ E+ + R + Q+ + L I D D
Sbjct: 8 DQISEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMINEVDADGNGT 63
Query: 195 IDYSHFL 215
ID+ FL
Sbjct: 64 IDFPEFL 70
>sp|P93087|CALM_CAPAN Calmodulin (CaM)
Length = 149
Score = 31.6 bits (70), Expect = 0.73
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 24 EEFTQMKIAFSNSDKSGEGCLNRAEMKKICRLFHVPISQDLLMSLLDQCITVADPD---L 194
++ ++ K AFS DK G+GC+ E+ + R + Q+ + L I D D
Sbjct: 8 DQISEFKEAFSLFDKDGDGCITTKELGTVMR----SLGQNPTEAELQDMINEVDADGNGT 63
Query: 195 IDYSHFL 215
ID+ FL
Sbjct: 64 IDFPEFL 70
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,957,810
Number of Sequences: 369166
Number of extensions: 774449
Number of successful extensions: 2035
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2035
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2095022160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)