Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_E23
(286 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q92S25|Y612_RHIME Hypothetical UPF0262 protein R00612 28 5.0
sp|P32600|TOR2_YEAST Phosphatidylinositol 3-kinase TOR2 (PI... 28 5.0
>sp|Q92S25|Y612_RHIME Hypothetical UPF0262 protein R00612
Length = 158
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 187 NQLLSDLIAA*IRLLTKVAMRIFHLLCVLRW 279
+Q L D ++ IRL A R+F L+CVL W
Sbjct: 126 SQTLMDRLSGKIRLDFDTARRLFTLVCVLYW 156
>sp|P32600|TOR2_YEAST Phosphatidylinositol 3-kinase TOR2 (PI3-kinase) (PtdIns-3-kinase)
(PI3K)
Length = 2473
Score = 28.5 bits (62), Expect = 5.0
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Frame = +1
Query: 46 PDLIDYSHFLYFINWRINPYPAPVCEIDFLHNSTDLFKGKCVEEIN*NQLLSDLIAA*IR 225
P+L DYSH + I R+ Y A L + + G+ + IN +++ S ++ A +R
Sbjct: 1075 PNLEDYSHLIMPIVVRMTEYSA-----GSLKKISIITLGRLAKNINLSEMSSRIVQALVR 1129
Query: 226 L-------LTKVAMRIFHLL 264
+ LTK M LL
Sbjct: 1130 ILNNGDRELTKATMNTLSLL 1149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,363,577
Number of Sequences: 369166
Number of extensions: 537754
Number of successful extensions: 1159
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)