DrC_00097
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00097 (759 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q8RD98|RF1_THETN Peptide chain release factor 1 (RF-1) 34 0.49 sp|Q8R6A3|LGT_FUSNN Prolipoprotein diacylglyceryl transferase 32 2.4 sp|Q9N3F0|BXDC1_CAEEL Brix domain containing protein 1 homolog 30 7.1 sp|Q9MUL3|NU6C_MESVI NAD(P)H-quinone oxidoreductase chain 6... 30 7.1
>sp|Q8RD98|RF1_THETN Peptide chain release factor 1 (RF-1) Length = 356 Score = 33.9 bits (76), Expect = 0.49 Identities = 27/84 (32%), Positives = 40/84 (47%) Frame = +1 Query: 358 AAITDLTISFEIIRQSLEEVGLEEDLILIPMVEAGISIEVEGDLIGHLIQLKEKKSKWME 537 AAI D+ + + ++ LEE+ E+L+ E E E L QL+EKK K ME Sbjct: 39 AAIEDIVLKYREYKKVLEEIKATEELLSSQDEELKEMAEEE------LSQLEEKKEKLME 92 Query: 538 *ILILEMKRNFQH*ANKFCNINSG 609 I IL + ++ N I +G Sbjct: 93 EIKILLLPKDPNDEKNVIMEIRAG 116
>sp|Q8R6A3|LGT_FUSNN Prolipoprotein diacylglyceryl transferase Length = 288 Score = 31.6 bits (70), Expect = 2.4 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Frame = -2 Query: 329 IILKIIRFAV--FSVSTEPNSHRN*MYLTPVLIFMIIVLVSLFFNVSTFSIFFHSTKHIL 156 +IL +I F + F + + N M+ ++I+ I ++ FF V F H++ Sbjct: 209 LILNLIGFFIIWFILRKKENKASGYMWWWYIIIYSINRIIVSFFRVEDLMFFNFRAPHVI 268 Query: 155 SVISFSIFLAFLIK 114 S+I ++ + FL K Sbjct: 269 SIILIAVSIFFLKK 282
>sp|Q9N3F0|BXDC1_CAEEL Brix domain containing protein 1 homolog Length = 297 Score = 30.0 bits (66), Expect = 7.1 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%) Frame = +1 Query: 166 LVEWKNIEKVDTLKNRETSTIIMKINTGVRYIQFLWLFGSVETLNTANRIILRIIAVKIK 345 +V+W KVDT++ T+I +F +++ N A R+ ++ Sbjct: 160 MVDWFRGPKVDTVRLEGLETVI--------------VFTALDETNLALRVYRPMLKKSAT 205 Query: 346 AFPEAAITDL--TISFEIIRQSLEEVGL 423 A P + ++ +ISFE++R+ L + L Sbjct: 206 ATPRVELAEMGPSISFEVMRKKLADDAL 233
>sp|Q9MUL3|NU6C_MESVI NAD(P)H-quinone oxidoreductase chain 6, chloroplast (NAD(P)H dehydrogenase, chain 6) (NADH-plastoquinone oxidoreductase chain 6) Length = 189 Score = 30.0 bits (66), Expect = 7.1 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 6/95 (6%) Frame = -2 Query: 383 LIVRSVIAASGKAFIFTAIILKIIRFAVFSVSTEPNSH--RN*MY---LTPVLIFMIIVL 219 L++ + A+ + I+ I II FA+ V+ N + N M L+ + F +L Sbjct: 51 LLLNAEFIAAAQVLIYVGAINVIILFAIMLVNKIENLNPSNNQMMRNGLSSFICFSFFIL 110 Query: 218 VS-LFFNVSTFSIFFHSTKHILSVISFSIFLAFLI 117 +S + F+ STK+ +S+I IF FL+ Sbjct: 111 LSNMIFDTQWIDTVGVSTKYSISIIGNHIFSDFLL 145
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,327,472
Number of Sequences: 369166
Number of extensions: 1356321
Number of successful extensions: 4021
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4018
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
