Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_F10
(722 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8RD98|RF1_THETN Peptide chain release factor 1 (RF-1) 34 0.45
sp|Q8R6A3|LGT_FUSNN Prolipoprotein diacylglyceryl transferase 32 2.2
sp|Q9N3F0|BXDC1_CAEEL Brix domain containing protein 1 homolog 30 6.5
sp|Q9MUL3|NU6C_MESVI NAD(P)H-quinone oxidoreductase chain 6... 30 6.5
>sp|Q8RD98|RF1_THETN Peptide chain release factor 1 (RF-1)
Length = 356
Score = 33.9 bits (76), Expect = 0.45
Identities = 27/84 (32%), Positives = 40/84 (47%)
Frame = +2
Query: 326 AAITDLTISFEIIRQSLEEVGLEEDLILIPMVEAGISIEVEGDLIGHLIQLKEKKSKWME 505
AAI D+ + + ++ LEE+ E+L+ E E E L QL+EKK K ME
Sbjct: 39 AAIEDIVLKYREYKKVLEEIKATEELLSSQDEELKEMAEEE------LSQLEEKKEKLME 92
Query: 506 *ILILEMKRNFQH*ANKFCNINSG 577
I IL + ++ N I +G
Sbjct: 93 EIKILLLPKDPNDEKNVIMEIRAG 116
>sp|Q8R6A3|LGT_FUSNN Prolipoprotein diacylglyceryl transferase
Length = 288
Score = 31.6 bits (70), Expect = 2.2
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -3
Query: 297 IILKIIRFAV--FSVSTEPNSHRN*MYLTPVLIFMIIVLVSLFFNVSTFSIFFHSTKHIL 124
+IL +I F + F + + N M+ ++I+ I ++ FF V F H++
Sbjct: 209 LILNLIGFFIIWFILRKKENKASGYMWWWYIIIYSINRIIVSFFRVEDLMFFNFRAPHVI 268
Query: 123 SVISFSIFLAFLIK 82
S+I ++ + FL K
Sbjct: 269 SIILIAVSIFFLKK 282
>sp|Q9N3F0|BXDC1_CAEEL Brix domain containing protein 1 homolog
Length = 297
Score = 30.0 bits (66), Expect = 6.5
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 134 LVEWKNIEKVDTLKNRETSTIIMKINTGVRYIQFLWLFGSVETLNTANRIILRIIAVKIK 313
+V+W KVDT++ T+I +F +++ N A R+ ++
Sbjct: 160 MVDWFRGPKVDTVRLEGLETVI--------------VFTALDETNLALRVYRPMLKKSAT 205
Query: 314 AFPEAAITDL--TISFEIIRQSLEEVGL 391
A P + ++ +ISFE++R+ L + L
Sbjct: 206 ATPRVELAEMGPSISFEVMRKKLADDAL 233
>sp|Q9MUL3|NU6C_MESVI NAD(P)H-quinone oxidoreductase chain 6, chloroplast (NAD(P)H
dehydrogenase, chain 6) (NADH-plastoquinone
oxidoreductase chain 6)
Length = 189
Score = 30.0 bits (66), Expect = 6.5
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Frame = -3
Query: 351 LIVRSVIAASGKAFIFTAIILKIIRFAVFSVSTEPNSH--RN*MY---LTPVLIFMIIVL 187
L++ + A+ + I+ I II FA+ V+ N + N M L+ + F +L
Sbjct: 51 LLLNAEFIAAAQVLIYVGAINVIILFAIMLVNKIENLNPSNNQMMRNGLSSFICFSFFIL 110
Query: 186 VS-LFFNVSTFSIFFHSTKHILSVISFSIFLAFLI 85
+S + F+ STK+ +S+I IF FL+
Sbjct: 111 LSNMIFDTQWIDTVGVSTKYSISIIGNHIFSDFLL 145
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,640,694
Number of Sequences: 369166
Number of extensions: 1239789
Number of successful extensions: 3710
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3708
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6462248555
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)