Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_I08
(758 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8RD98|RF1_THETN Peptide chain release factor 1 (RF-1) 34 0.49
sp|Q8K991|TIG_BUCAP Trigger factor (TF) 32 2.4
sp|Q8R6A3|LGT_FUSNN Prolipoprotein diacylglyceryl transferase 32 2.4
sp|Q9SVV6|KCO6_ARATH Probable calcium-activated outward-rec... 31 4.1
sp|P48934|C560_CHOCR Succinate dehydrogenase cytochrome b56... 30 5.4
sp|Q9MUL3|NU6C_MESVI NAD(P)H-quinone oxidoreductase chain 6... 30 5.4
sp|P75555|Y214_MYCPN Hypothetical protein MG076 homolog (G0... 30 7.1
sp|Q9N3F0|BXDC1_CAEEL Brix domain containing protein 1 homolog 30 7.1
sp|Q9ZYM7|NU5M_RHISA NADH-ubiquinone oxidoreductase chain 5... 30 9.2
>sp|Q8RD98|RF1_THETN Peptide chain release factor 1 (RF-1)
Length = 356
Score = 33.9 bits (76), Expect = 0.49
Identities = 27/84 (32%), Positives = 40/84 (47%)
Frame = +3
Query: 357 AAITDLTISFEIIRQSLEEVGLEEDLILIPMVEAGISIEVEGDLIGHLIQLKEKKSKWME 536
AAI D+ + + ++ LEE+ E+L+ E E E L QL+EKK K ME
Sbjct: 39 AAIEDIVLKYREYKKVLEEIKATEELLSSQDEELKEMAEEE------LSQLEEKKEKLME 92
Query: 537 *ILILEMKRNFQH*ANKFCNINSG 608
I IL + ++ N I +G
Sbjct: 93 EIKILLLPKDPNDEKNVIMEIRAG 116
>sp|Q8K991|TIG_BUCAP Trigger factor (TF)
Length = 442
Score = 31.6 bits (70), Expect = 2.4
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +3
Query: 75 LKNIELCIAKIDYLIRKARKIEKLMT-DKMCLVEWKNIEKV 194
+KNIEL + + +LI+K + IEK T D++ WKN E++
Sbjct: 400 IKNIELEMQVMQFLIKKVKIIEKNWTLDEIMNYNWKNNEEL 440
>sp|Q8R6A3|LGT_FUSNN Prolipoprotein diacylglyceryl transferase
Length = 288
Score = 31.6 bits (70), Expect = 2.4
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = -2
Query: 328 IILKIIRFAV--FSVSTEPNSHRN*MYLTPVLIFMIIVLVSLFFNVSTFSIFFHSTKHIL 155
+IL +I F + F + + N M+ ++I+ I ++ FF V F H++
Sbjct: 209 LILNLIGFFIIWFILRKKENKASGYMWWWYIIIYSINRIIVSFFRVEDLMFFNFRAPHVI 268
Query: 154 SVISFSIFLAFLIK 113
S+I ++ + FL K
Sbjct: 269 SIILIAVSIFFLKK 282
>sp|Q9SVV6|KCO6_ARATH Probable calcium-activated outward-rectifying potassium channel 6
(AtKCO6)
Length = 436
Score = 30.8 bits (68), Expect = 4.1
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 93 CIAKIDYLIRKARKIEKLMTDKMCLVEWKNIEKVDTLKN 209
C++K +Y+I K +++EK+ TDK L K +K+D N
Sbjct: 384 CVSKAEYVIYKLKEMEKI-TDKDILPISKQFDKLDRCSN 421
>sp|P48934|C560_CHOCR Succinate dehydrogenase cytochrome b560 subunit (Succinate
dehydrogenase, subunit III)
Length = 127
Score = 30.4 bits (67), Expect = 5.4
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = -2
Query: 364 IAASGKAFIFTAIILKIIRFAVFSVSTEPNSHRN*MYLTPVLIFM-IIVLVSLFFNVSTF 188
I+ G AF FT ++ IR + S N N + L I II+ +LF + F
Sbjct: 33 ISGVGLAFFFTTFLI-FIRIILSS-----NFACNLLTLISFEISQWIIIYFNLFILLFLF 86
Query: 187 SIFFHSTKHILSVISFSIFLAFLIK*SIFAMQS 89
F+ T+HI+ F + + +L K S+F + S
Sbjct: 87 YHLFNGTRHIIWDFGFLLDIKYLSKFSLFLLVS 119
>sp|Q9MUL3|NU6C_MESVI NAD(P)H-quinone oxidoreductase chain 6, chloroplast (NAD(P)H
dehydrogenase, chain 6) (NADH-plastoquinone
oxidoreductase chain 6)
Length = 189
Score = 30.4 bits (67), Expect = 5.4
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Frame = -2
Query: 382 LIVRSVIAASGKAFIFTAIILKIIRFAVFSVSTEPNSH--RN*MY---LTPVLIFMIIVL 218
L++ + A+ + I+ I II FA+ V+ N + N M L+ + F +L
Sbjct: 51 LLLNAEFIAAAQVLIYVGAINVIILFAIMLVNKIENLNPSNNQMMRNGLSSFICFSFFIL 110
Query: 217 VS-LFFNVSTFSIFFHSTKHILSVISFSIFLAFLIK*SIFAMQSSIFFKSHVF 62
+S + F+ STK+ +S+I IF FL+ I ++ + VF
Sbjct: 111 LSNMIFDTQWIDTVGVSTKYSISIIGNHIFSDFLLPFEIVSVLLLVTLVGAVF 163
>sp|P75555|Y214_MYCPN Hypothetical protein MG076 homolog (G07_orf138)
Length = 138
Score = 30.0 bits (66), Expect = 7.1
Identities = 13/61 (21%), Positives = 33/61 (54%)
Frame = -2
Query: 223 VLVSLFFNVSTFSIFFHSTKHILSVISFSIFLAFLIK*SIFAMQSSIFFKSHVFTRFRIN 44
+ + LFF + ++FF+ T +I ++ S ++F++ + +Q + K+ R+ I+
Sbjct: 22 IYIVLFFAILNLTVFFNKTNNINLILKNSCVVSFVVVWLLVCLQGIVRLKTCDGARYEIS 81
Query: 43 R 41
+
Sbjct: 82 K 82
>sp|Q9N3F0|BXDC1_CAEEL Brix domain containing protein 1 homolog
Length = 297
Score = 30.0 bits (66), Expect = 7.1
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +3
Query: 165 LVEWKNIEKVDTLKNRETSTIIMKINTGVRYIQFLWLFGSVETLNTANRIILRIIAVKIK 344
+V+W KVDT++ T+I +F +++ N A R+ ++
Sbjct: 160 MVDWFRGPKVDTVRLEGLETVI--------------VFTALDETNLALRVYRPMLKKSAT 205
Query: 345 AFPEAAITDL--TISFEIIRQSLEEVGL 422
A P + ++ +ISFE++R+ L + L
Sbjct: 206 ATPRVELAEMGPSISFEVMRKKLADDAL 233
>sp|Q9ZYM7|NU5M_RHISA NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 552
Score = 29.6 bits (65), Expect = 9.2
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Frame = -2
Query: 250 TPVLIFMIIVLVSLFFNVSTFSIFFHSTKHILSVISFSI-------FLAFLIK*SIFAMQ 92
T +LI IV + +FF F+IFF +++S++SF +++ + ++ +
Sbjct: 6 TMMLISFSIVFLYMFFMTFYFNIFFIFEYNLMSILSFEYKFYILLDWMSCMFSFTVLMIS 65
Query: 91 SSIFFKSHVF 62
S + + SH +
Sbjct: 66 SMVLWYSHSY 75
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,586,945
Number of Sequences: 369166
Number of extensions: 1355411
Number of successful extensions: 4188
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4182
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)