Planaria EST Database


DrC_00091

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00091
         (665 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16750|UL74_HCMVA  Glycoprotein UL74 precursor                  33   0.51 
sp|Q7A004|SARU_STAAW  HTH-type transcriptional regulator sar...    32   2.0  
sp|P58145|ROAA_ASTLO  Ribosomal operon-associated A protein ...    32   2.0  
sp|Q9EZK4|SARU_STAAU  HTH-type transcriptional regulator sar...    32   2.0  
sp|Q9S597|C27AA_BACUH  Pesticidal crystal protein cry27Aa (I...    31   2.5  
sp|P48303|EDG1_RAT  Sphingosine 1-phosphate receptor Edg-1 (...    30   5.7  
sp|Q8ZIG8|LEU1_YERPE  2-isopropylmalate synthase (Alpha-isop...    30   5.7  
sp|O08530|EDG1_MOUSE  Sphingosine 1-phosphate receptor Edg-1...    30   5.7  
sp|Q58791|YD96_METJA  Hypothetical protein MJ1396                  29   9.7  
>sp|P16750|UL74_HCMVA Glycoprotein UL74 precursor
          Length = 466

 Score = 33.5 bits (75), Expect = 0.51
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
 Frame = +1

Query: 55  DHSKTYLP-KLSSEKLSKDIKPELSWYDYTNK----KNYKCSTLPNT------INVYRRP 201
           ++S TYL     S +L K  K   S Y++T K    +   C T+P+       +NV +R 
Sbjct: 103 NYSITYLWFDFYSTQLRKPAKYVYSQYNHTAKTITFRPPPCGTVPSMTCLSEMLNVSKRN 162

Query: 202 LTTSQDIGFFHEYNPLLKNLPWMHVKRY 285
            T  Q  G F  +NP+  N+P  + K Y
Sbjct: 163 DTGEQGCGNFTTFNPMFFNVPRWNTKLY 190
>sp|Q7A004|SARU_STAAW HTH-type transcriptional regulator sarU (Staphylococcal accessory
           regulator U)
 sp|Q6G6H6|SARU_STAAS HTH-type transcriptional regulator sarU (Staphylococcal accessory
           regulator U)
 sp|Q7A3K0|SARU_STAAN HTH-type transcriptional regulator sarU (Staphylococcal accessory
           regulator U)
 sp|Q99RD5|SARU_STAAM HTH-type transcriptional regulator sarU (Staphylococcal accessory
           regulator U)
          Length = 247

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
 Frame = +3

Query: 276 KKISCRSRRNDKICQ--------------PNSSNKSYILFVLIVYLSFISKFITKLIFRI 413
           KKI+C     DKI +              P  S + +ILF+ I+Y     K+   L F  
Sbjct: 102 KKIACVINELDKIIKGFNKERDYIKYQWAPKYSKEFFILFMNIMYSKDFLKYRFNLTFLD 161

Query: 414 ISASMNYCMTRNNNFNVC*LFTFVFEMNSSV*YPKMYLKTLTYINTAEFLLNNSHL---K 584
           +S        +N   N+  LF  +  M     YP++ ++++  +N    L+    L   +
Sbjct: 162 LSILYVISSRKNEILNLKDLFESIRFM-----YPQI-VRSVNRLNNKGMLIKERSLADER 215

Query: 585 LKLYKLNVIGYYTKLSV 635
           + L K+N I Y T  S+
Sbjct: 216 IVLIKINKIQYNTIKSI 232
>sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein (RoaA)
          Length = 519

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 13/90 (14%)
 Frame = +2

Query: 311 DLSTKFF*QILHSFCFDCLPKFYQQIHY*I---NFSYYFCFYELLYD*K*QFQRLLI--- 472
           +LS KF   + + FCF+ L KF       +   NF + F FY  LYD    F+++L+   
Sbjct: 110 NLSFKFNFFLFYKFCFNNLVKFVMYPFLELKTENFVFNFNFYTNLYDIFLNFKKILLKNF 169

Query: 473 -----VYICF*NEF*CIISKDVFKN--FNL 541
                  I F N+F  +  K ++KN  FN+
Sbjct: 170 MKLYYFTINFNNKFNYMNKKWLYKNLTFNI 199
>sp|Q9EZK4|SARU_STAAU HTH-type transcriptional regulator sarU (Staphylococcal accessory
           regulator U)
 sp|Q5HD55|SARU_STAAC HTH-type transcriptional regulator sarU (Staphylococcal accessory
           regulator U)
          Length = 247

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
 Frame = +3

Query: 276 KKISCRSRRNDKICQ--------------PNSSNKSYILFVLIVYLSFISKFITKLIFRI 413
           KKI+C     DKI +              P  S + +ILF+ I+Y     K+   L F  
Sbjct: 102 KKIACVINELDKIIKGFNKERDYIKYQWAPKYSKEFFILFMNIMYSKDFLKYRFNLTFLD 161

Query: 414 ISASMNYCMTRNNNFNVC*LFTFVFEMNSSV*YPKMYLKTLTYINTAEFLLNNSHL---K 584
           +S        +N   N+  LF  +  M     YP++ ++++  +N    L+    L   +
Sbjct: 162 LSILYVISSRKNEILNLKDLFESIRFM-----YPQI-VRSVNRLNNKGMLIKERSLADER 215

Query: 585 LKLYKLNVIGYYTKLSV 635
           + L K+N I Y T  S+
Sbjct: 216 IVLIKINKIQYNTIKSI 232
>sp|Q9S597|C27AA_BACUH Pesticidal crystal protein cry27Aa (Insecticidal delta-endotoxin
           CryXXVIIA(a)) (Crystaline entomocidal protoxin) (94 kDa
           crystal protein)
          Length = 826

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
 Frame = +1

Query: 1   NTQLGYQNTIREYVREPIDHSKTYLPKLSSEKLSKDIKPELSWYDYTNKKNYKCSTLP-- 174
           N  L YQ T+  +V + I    TY P+L +  +  +I     + D  N+   K    P  
Sbjct: 278 NNGLVYQRTMTLFVLDLIAMFSTYDPRLYTMPIKTEILTRTIYTDGVNRNEPKSIHNPGL 337

Query: 175 -NTINVYRRPLTTSQDIGFFHEYNPLLKNLPWMHVKRYPAVQGETTRFVNQI 327
              +   +  +   Q   F   +  + +++ + H   Y  VQG ++  +N+I
Sbjct: 338 FRRLEQMKLHIYEYQGAQFLSGHQNIFRSMNYNHPLIYGPVQGYSSSNINKI 389
>sp|P48303|EDG1_RAT Sphingosine 1-phosphate receptor Edg-1 (Sphingosine 1-phosphate
           receptor 1) (S1P1)
          Length = 383

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 600 IYIILILDVNCSAKTRQCLYRLKF 529
           ++I+L+LDV C AKT   LY+ ++
Sbjct: 273 LFILLLLDVGCKAKTCDILYKAEY 296
>sp|Q8ZIG8|LEU1_YERPE 2-isopropylmalate synthase (Alpha-isopropylmalate synthase)
           (Alpha-IPM synthetase)
 sp|Q66EM1|LEU1_YERPS 2-isopropylmalate synthase (Alpha-isopropylmalate synthase)
           (Alpha-IPM synthetase)
          Length = 520

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
 Frame = -1

Query: 533 SF*IHLWILYTRIHFKNKCKQLTNVEIVISSHTVIHRSRNNTKN-*FSNEFADKT*VDN 360
           +F IH+++  + +H ++K K+  +  + ++ H+V  R+RN T +  FS E A +T +DN
Sbjct: 93  AFRIHVFLATSTLHIESKLKRSFDDVLAMAVHSV-KRARNYTDDVEFSCEDAGRTPIDN 150
>sp|O08530|EDG1_MOUSE Sphingosine 1-phosphate receptor Edg-1 (Sphingosine 1-phosphate
           receptor 1) (S1P1) (Lysophospholipid receptor B1)
          Length = 382

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 600 IYIILILDVNCSAKTRQCLYRLKF 529
           ++I+L+LDV C AKT   LY+ ++
Sbjct: 272 LFILLLLDVGCKAKTCDILYKAEY 295
>sp|Q58791|YD96_METJA Hypothetical protein MJ1396
          Length = 2894

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +3

Query: 366 YLSFISKFI-TKLIFRIISASMNYCMTRNNNFNVC*LFTFVFEMNSSV*YPKMYLKTLTY 542
           YL  IS F+ T L+   +S  +N   T NNN N        FE+N+S+ Y      T T 
Sbjct: 4   YLKNISIFVFTILLLSNVSLGLNVSTT-NNNSN--------FELNNSLIYKLNNSLTNTT 54

Query: 543 INTAEFLLNNS 575
            N+   ++NN+
Sbjct: 55  NNSGSIIINNT 65
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,881,155
Number of Sequences: 369166
Number of extensions: 1390495
Number of successful extensions: 3259
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3255
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00091

  1. Dr_sW_009_L09
  2. Dr_sW_003_F11