Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_F11
(665 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P16750|UL74_HCMVA Glycoprotein UL74 precursor 33 0.51
sp|Q7A004|SARU_STAAW HTH-type transcriptional regulator sar... 32 2.0
sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein ... 32 2.0
sp|Q9EZK4|SARU_STAAU HTH-type transcriptional regulator sar... 32 2.0
sp|Q9S597|C27AA_BACUH Pesticidal crystal protein cry27Aa (I... 31 2.5
sp|P48303|EDG1_RAT Sphingosine 1-phosphate receptor Edg-1 (... 30 5.7
sp|Q8ZIG8|LEU1_YERPE 2-isopropylmalate synthase (Alpha-isop... 30 5.7
sp|O08530|EDG1_MOUSE Sphingosine 1-phosphate receptor Edg-1... 30 5.7
sp|Q58791|YD96_METJA Hypothetical protein MJ1396 29 9.7
>sp|P16750|UL74_HCMVA Glycoprotein UL74 precursor
Length = 466
Score = 33.5 bits (75), Expect = 0.51
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Frame = +1
Query: 55 DHSKTYLP-KLSSEKLSKDIKPELSWYDYTNK----KNYKCSTLPNT------INVYRRP 201
++S TYL S +L K K S Y++T K + C T+P+ +NV +R
Sbjct: 103 NYSITYLWFDFYSTQLRKPAKYVYSQYNHTAKTITFRPPPCGTVPSMTCLSEMLNVSKRN 162
Query: 202 LTTSQDIGFFHEYNPLLKNLPWMHVKRY 285
T Q G F +NP+ N+P + K Y
Sbjct: 163 DTGEQGCGNFTTFNPMFFNVPRWNTKLY 190
>sp|Q7A004|SARU_STAAW HTH-type transcriptional regulator sarU (Staphylococcal accessory
regulator U)
sp|Q6G6H6|SARU_STAAS HTH-type transcriptional regulator sarU (Staphylococcal accessory
regulator U)
sp|Q7A3K0|SARU_STAAN HTH-type transcriptional regulator sarU (Staphylococcal accessory
regulator U)
sp|Q99RD5|SARU_STAAM HTH-type transcriptional regulator sarU (Staphylococcal accessory
regulator U)
Length = 247
Score = 31.6 bits (70), Expect = 2.0
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Frame = +3
Query: 276 KKISCRSRRNDKICQ--------------PNSSNKSYILFVLIVYLSFISKFITKLIFRI 413
KKI+C DKI + P S + +ILF+ I+Y K+ L F
Sbjct: 102 KKIACVINELDKIIKGFNKERDYIKYQWAPKYSKEFFILFMNIMYSKDFLKYRFNLTFLD 161
Query: 414 ISASMNYCMTRNNNFNVC*LFTFVFEMNSSV*YPKMYLKTLTYINTAEFLLNNSHL---K 584
+S +N N+ LF + M YP++ ++++ +N L+ L +
Sbjct: 162 LSILYVISSRKNEILNLKDLFESIRFM-----YPQI-VRSVNRLNNKGMLIKERSLADER 215
Query: 585 LKLYKLNVIGYYTKLSV 635
+ L K+N I Y T S+
Sbjct: 216 IVLIKINKIQYNTIKSI 232
>sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein (RoaA)
Length = 519
Score = 31.6 bits (70), Expect = 2.0
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 13/90 (14%)
Frame = +2
Query: 311 DLSTKFF*QILHSFCFDCLPKFYQQIHY*I---NFSYYFCFYELLYD*K*QFQRLLI--- 472
+LS KF + + FCF+ L KF + NF + F FY LYD F+++L+
Sbjct: 110 NLSFKFNFFLFYKFCFNNLVKFVMYPFLELKTENFVFNFNFYTNLYDIFLNFKKILLKNF 169
Query: 473 -----VYICF*NEF*CIISKDVFKN--FNL 541
I F N+F + K ++KN FN+
Sbjct: 170 MKLYYFTINFNNKFNYMNKKWLYKNLTFNI 199
>sp|Q9EZK4|SARU_STAAU HTH-type transcriptional regulator sarU (Staphylococcal accessory
regulator U)
sp|Q5HD55|SARU_STAAC HTH-type transcriptional regulator sarU (Staphylococcal accessory
regulator U)
Length = 247
Score = 31.6 bits (70), Expect = 2.0
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Frame = +3
Query: 276 KKISCRSRRNDKICQ--------------PNSSNKSYILFVLIVYLSFISKFITKLIFRI 413
KKI+C DKI + P S + +ILF+ I+Y K+ L F
Sbjct: 102 KKIACVINELDKIIKGFNKERDYIKYQWAPKYSKEFFILFMNIMYSKDFLKYRFNLTFLD 161
Query: 414 ISASMNYCMTRNNNFNVC*LFTFVFEMNSSV*YPKMYLKTLTYINTAEFLLNNSHL---K 584
+S +N N+ LF + M YP++ ++++ +N L+ L +
Sbjct: 162 LSILYVISSRKNEILNLKDLFESIRFM-----YPQI-VRSVNRLNNKGMLIKERSLADER 215
Query: 585 LKLYKLNVIGYYTKLSV 635
+ L K+N I Y T S+
Sbjct: 216 IVLIKINKIQYNTIKSI 232
>sp|Q9S597|C27AA_BACUH Pesticidal crystal protein cry27Aa (Insecticidal delta-endotoxin
CryXXVIIA(a)) (Crystaline entomocidal protoxin) (94 kDa
crystal protein)
Length = 826
Score = 31.2 bits (69), Expect = 2.5
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Frame = +1
Query: 1 NTQLGYQNTIREYVREPIDHSKTYLPKLSSEKLSKDIKPELSWYDYTNKKNYKCSTLP-- 174
N L YQ T+ +V + I TY P+L + + +I + D N+ K P
Sbjct: 278 NNGLVYQRTMTLFVLDLIAMFSTYDPRLYTMPIKTEILTRTIYTDGVNRNEPKSIHNPGL 337
Query: 175 -NTINVYRRPLTTSQDIGFFHEYNPLLKNLPWMHVKRYPAVQGETTRFVNQI 327
+ + + Q F + + +++ + H Y VQG ++ +N+I
Sbjct: 338 FRRLEQMKLHIYEYQGAQFLSGHQNIFRSMNYNHPLIYGPVQGYSSSNINKI 389
>sp|P48303|EDG1_RAT Sphingosine 1-phosphate receptor Edg-1 (Sphingosine 1-phosphate
receptor 1) (S1P1)
Length = 383
Score = 30.0 bits (66), Expect = 5.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 600 IYIILILDVNCSAKTRQCLYRLKF 529
++I+L+LDV C AKT LY+ ++
Sbjct: 273 LFILLLLDVGCKAKTCDILYKAEY 296
>sp|Q8ZIG8|LEU1_YERPE 2-isopropylmalate synthase (Alpha-isopropylmalate synthase)
(Alpha-IPM synthetase)
sp|Q66EM1|LEU1_YERPS 2-isopropylmalate synthase (Alpha-isopropylmalate synthase)
(Alpha-IPM synthetase)
Length = 520
Score = 30.0 bits (66), Expect = 5.7
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Frame = -1
Query: 533 SF*IHLWILYTRIHFKNKCKQLTNVEIVISSHTVIHRSRNNTKN-*FSNEFADKT*VDN 360
+F IH+++ + +H ++K K+ + + ++ H+V R+RN T + FS E A +T +DN
Sbjct: 93 AFRIHVFLATSTLHIESKLKRSFDDVLAMAVHSV-KRARNYTDDVEFSCEDAGRTPIDN 150
>sp|O08530|EDG1_MOUSE Sphingosine 1-phosphate receptor Edg-1 (Sphingosine 1-phosphate
receptor 1) (S1P1) (Lysophospholipid receptor B1)
Length = 382
Score = 30.0 bits (66), Expect = 5.7
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -3
Query: 600 IYIILILDVNCSAKTRQCLYRLKF 529
++I+L+LDV C AKT LY+ ++
Sbjct: 272 LFILLLLDVGCKAKTCDILYKAEY 295
>sp|Q58791|YD96_METJA Hypothetical protein MJ1396
Length = 2894
Score = 29.3 bits (64), Expect = 9.7
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +3
Query: 366 YLSFISKFI-TKLIFRIISASMNYCMTRNNNFNVC*LFTFVFEMNSSV*YPKMYLKTLTY 542
YL IS F+ T L+ +S +N T NNN N FE+N+S+ Y T T
Sbjct: 4 YLKNISIFVFTILLLSNVSLGLNVSTT-NNNSN--------FELNNSLIYKLNNSLTNTT 54
Query: 543 INTAEFLLNNS 575
N+ ++NN+
Sbjct: 55 NNSGSIIINNT 65
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,881,155
Number of Sequences: 369166
Number of extensions: 1390495
Number of successful extensions: 3259
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3255
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)