Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_L09
(540 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P16750|UL74_HCMVA Glycoprotein UL74 precursor 33 0.34
sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein ... 32 0.98
sp|Q68WV8|SYL_RICTY Leucyl-tRNA synthetase (Leucine--tRNA l... 29 8.3
sp|O34608|YDIN_BACSU Hypothetical protein ydiN precursor 29 8.3
sp|Q9XBN7|BLAB4_FLAME Carbapenem-hydrolyzing beta-lactamase... 29 8.3
>sp|P16750|UL74_HCMVA Glycoprotein UL74 precursor
Length = 466
Score = 33.5 bits (75), Expect = 0.34
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Frame = +3
Query: 36 DHSKTYLP-KLSSEKLSKDIKPELSWYDYTNKK-NFK---CSTLPNT------INVYRRP 182
++S TYL S +L K K S Y++T K F+ C T+P+ +NV +R
Sbjct: 103 NYSITYLWFDFYSTQLRKPAKYVYSQYNHTAKTITFRPPPCGTVPSMTCLSEMLNVSKRN 162
Query: 183 LTTSQDIGFFHEYNPLLKNLPWMHVKRY 266
T Q G F +NP+ N+P + K Y
Sbjct: 163 DTGEQGCGNFTTFNPMFFNVPRWNTKLY 190
>sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein (RoaA)
Length = 519
Score = 32.0 bits (71), Expect = 0.98
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +1
Query: 292 DLSTKFF*QILHSFCFDCLPKFYQQIHY*I---NFSYYFCFYELLYD*K*QFQRLLIVFE 462
+LS KF + + FCF+ L KF + NF + F FY LYD F+++L+
Sbjct: 110 NLSFKFNFFLFYKFCFNNLVKFVMYPFLELKTENFVFNFNFYTNLYDIFLNFKKILLKNF 169
Query: 463 MNSSV*YPKMYLKTLTYINTAEFL 534
M K+Y T+ + N ++
Sbjct: 170 M-------KLYYFTINFNNKFNYM 186
>sp|Q68WV8|SYL_RICTY Leucyl-tRNA synthetase (Leucine--tRNA ligase) (LeuRS)
Length = 828
Score = 28.9 bits (63), Expect = 8.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 180 PLTTSQDIGFFHEYNPLLKNLPWMHV 257
P+T D+ F + YNPL + W HV
Sbjct: 435 PVTLPDDVSFDNNYNPLEHHPSWKHV 460
>sp|O34608|YDIN_BACSU Hypothetical protein ydiN precursor
Length = 71
Score = 28.9 bits (63), Expect = 8.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 147 TLPNTINVYRRPLTTSQDIGFFHEYNPLLKNLPWMHVK 260
T NT+N +R + Q FFHE+ L K L +K
Sbjct: 19 TTKNTVNALKRMIYPKQKPSFFHEFKVLYKLLKKFCIK 56
>sp|Q9XBN7|BLAB4_FLAME Carbapenem-hydrolyzing beta-lactamase blaB-4 precursor (CHbetaL-4)
(Class B carbapenemase blaB-4) (Metallo lactamase
blaB-3)
Length = 249
Score = 28.9 bits (63), Expect = 8.3
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 42 SKTYLPKLSSEKLSKDIKPELSWYDYTNKKNFK 140
+KTY K++ L+KD KP + Y + N K+FK
Sbjct: 115 AKTYSTKMTDSILAKDNKPR-AQYTFDNNKSFK 146
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,842,705
Number of Sequences: 369166
Number of extensions: 1113159
Number of successful extensions: 2417
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2415
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)