Planaria EST Database

DrC_00085

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00085
         (683 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P07106|ENDR_BOVIN  Endozepine-related protein precursor (...    89   8e-18
sp|Q5R7P6|ACBD4_PONPY  Acyl-CoA-binding domain-containing pr...    69   1e-11
sp|Q6DGF9|ACBD4_RAT  Acyl-CoA-binding domain-containing prot...    68   2e-11
sp|Q8NC06|ACBD4_HUMAN  Acyl-CoA-binding domain-containing pr...    68   2e-11
sp|O75521|PECI_HUMAN  Peroxisomal 3,2-trans-enoyl-CoA isomer...    55   1e-07
sp|Q9WUR2|PECI_MOUSE  Peroxisomal 3,2-trans-enoyl-CoA isomer...    51   2e-06
sp|P12026|ACBP_PIG  Acyl-CoA-binding protein (ACBP) (Diazepa...    46   1e-04
sp|P07108|ACBP_HUMAN  Acyl-CoA-binding protein (ACBP) (Diaze...    46   1e-04
sp|P07107|ACBP_BOVIN  Acyl-CoA-binding protein (ACBP) (Diaze...    45   2e-04
sp|P31786|ACBP_MOUSE  Acyl-CoA-binding protein (ACBP) (Diaze...    45   2e-04

>sp|P07106|ENDR_BOVIN Endozepine-related protein precursor (Membrane-associated diazepam
           binding inhibitor) (MA-DBI)
          Length = 533

 Score = 89.4 bits (220), Expect = 8e-18
 Identities = 41/102 (40%), Positives = 64/102 (62%)
 Frame = +3

Query: 15  CNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLYVEELKKVIETMPHSTEVGNFLQTLG 194
           C + +PGFWD VGR KWDAW+++G++   +AM  YVEE+KK++ETMP + +V   L  +G
Sbjct: 84  CKLSKPGFWDPVGRYKWDAWSSLGDMTKEEAMIAYVEEMKKILETMPMTEKVEELLHVIG 143

Query: 195 SFYEVVDCVNSEENDNELSVYQQVGLKLSNSSESVSDKCSET 320
            FYE+V+   S  + +  SV  +   K+S   E + +  + T
Sbjct: 144 PFYEIVEDKKSGRSSDLTSVRLE---KISKCLEDLGNVLAST 182

>sp|Q5R7P6|ACBD4_PONPY Acyl-CoA-binding domain-containing protein 4
          Length = 269

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 25/64 (39%), Positives = 43/64 (67%)
 Frame = +3

Query: 15  CNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLYVEELKKVIETMPHSTEVGNFLQTLG 194
           C +PRPGFWD +GR KWDAWN++G +   +AM+ Y+ E+K V + +  +  +G   + + 
Sbjct: 54  CLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMF 113

Query: 195 SFYE 206
           +++E
Sbjct: 114 AYFE 117

>sp|Q6DGF9|ACBD4_RAT Acyl-CoA-binding domain-containing protein 4
          Length = 326

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 25/64 (39%), Positives = 42/64 (65%)
 Frame = +3

Query: 15  CNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLYVEELKKVIETMPHSTEVGNFLQTLG 194
           C +PRPGFWD +GR KWDAWN++G +   +AM+ Y+ E+K V + +  +  +G   + + 
Sbjct: 52  CLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMF 111

Query: 195 SFYE 206
            ++E
Sbjct: 112 GYFE 115

>sp|Q8NC06|ACBD4_HUMAN Acyl-CoA-binding domain-containing protein 4
          Length = 268

 Score = 68.2 bits (165), Expect = 2e-11
 Identities = 25/64 (39%), Positives = 42/64 (65%)
 Frame = +3

Query: 15  CNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLYVEELKKVIETMPHSTEVGNFLQTLG 194
           C +PRPGFWD +GR KWDAWN++G +   +AM+ Y+ E+K V + +  +  +G   + + 
Sbjct: 54  CLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMF 113

Query: 195 SFYE 206
            ++E
Sbjct: 114 GYFE 117

>sp|O75521|PECI_HUMAN Peroxisomal 3,2-trans-enoyl-CoA isomerase (Dodecenoyl-CoA
           isomerase) (Delta(3),delta(2)-enoyl-CoA isomerase)
           (D3,D2-enoyl-CoA isomerase) (DBI-related protein 1)
           (DRS-1) (Hepatocellular carcinoma-associated antigen 88)
          Length = 359

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 20/52 (38%), Positives = 36/52 (69%)
 Frame = +3

Query: 15  CNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLYVEELKKVIETMPHSTEV 170
           CN+P+PG +D++ +AKWDAWN +G++P   A   YV+ +  +  ++  S++V
Sbjct: 42  CNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQV 93

>sp|Q9WUR2|PECI_MOUSE Peroxisomal 3,2-trans-enoyl-CoA isomerase (Dodecenoyl-CoA
           isomerase) (Delta(3),delta(2)-enoyl-CoA isomerase)
           (D3,D2-enoyl-CoA isomerase)
          Length = 358

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 19/37 (51%), Positives = 26/37 (70%)
 Frame = +3

Query: 15  CNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLYVE 125
           CN+P+PG  D V +AKWDAWN +G++P   A   YV+
Sbjct: 42  CNMPKPGMLDFVNKAKWDAWNALGSLPKETARQNYVD 78

>sp|P12026|ACBP_PIG Acyl-CoA-binding protein (ACBP) (Diazepam-binding inhibitor) (DBI)
           (Endozepine) (EP) [Contains: DBI(32-86)]
          Length = 86

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +3

Query: 12  ECNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLY---VEELKK 137
           + N  RPG  D+ G+AKWDAWN +       AM  Y   VEELKK
Sbjct: 38  DINTERPGILDLKGKAKWDAWNGLKGTSKEDAMKAYINKVEELKK 82

>sp|P07108|ACBP_HUMAN Acyl-CoA-binding protein (ACBP) (Diazepam-binding inhibitor) (DBI)
           (Endozepine) (EP)
          Length = 87

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 22/45 (48%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 12  ECNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLY---VEELKK 137
           + N  RPG  D  G+AKWDAWN +       AM  Y   VEELKK
Sbjct: 39  DINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKK 83

>sp|P07107|ACBP_BOVIN Acyl-CoA-binding protein (ACBP) (Diazepam-binding inhibitor) (DBI)
           (Endozepine) (EP)
          Length = 87

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 22/45 (48%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +3

Query: 12  ECNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLY---VEELKK 137
           + N  RPG  D  G+AKWDAWN +       AM  Y   VEELKK
Sbjct: 39  DINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEELKK 83

>sp|P31786|ACBP_MOUSE Acyl-CoA-binding protein (ACBP) (Diazepam-binding inhibitor) (DBI)
           (Endozepine) (EP)
          Length = 87

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = +3

Query: 12  ECNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLYVE---ELKK 137
           + N  RPG  D+ G+AKWD+WN +       AM  YVE   ELKK
Sbjct: 39  DVNTDRPGLLDLKGKAKWDSWNKLKGTSKESAMKTYVEKVDELKK 83

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,085,196
Number of Sequences: 369166
Number of extensions: 1415301
Number of successful extensions: 4633
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4631
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5830600200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00085

  1. Dr_sW_003_D15
  2. Dr_sW_028_A11