Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_A11
(431 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03516|YM8G_YEAST Hypothetical 107.7 kDa protein in TSP3... 31 1.3
sp|Q8ESW9|RHAD_OCEIH Rhamnulose-1-phosphate aldolase 30 2.2
sp|O14011|CWF8_SCHPO Cell cycle control protein cwf8 29 3.7
sp|P13528|UNC86_CAEEL Transcription factor unc-86 (Uncoordi... 29 4.8
sp|Q8Z4W3|CYSZ_SALTI CysZ protein 28 8.3
>sp|Q03516|YM8G_YEAST Hypothetical 107.7 kDa protein in TSP3-IPP2 intergenic region
Length = 953
Score = 30.8 bits (68), Expect = 1.3
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 31 NSSESVSDKCS-ETSFYEVAPTFFGDFDAMETIRRLQDDIETLNERVKALESSH 189
N +E V DK +VA FFG ++TI +++++ LN++VKAL+ H
Sbjct: 275 NIAEYVPDKKRPHHKINKVAKFFFGK--KVDTISYIKEELPKLNQKVKALQEDH 326
>sp|Q8ESW9|RHAD_OCEIH Rhamnulose-1-phosphate aldolase
Length = 278
Score = 30.0 bits (66), Expect = 2.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 11 KSD*NYRIVANQSATNVPKLRFTKSLQLFSEISTRWRQSDDCRTI 145
K D N+R++ + ATN+ + FT L T W+ +C +
Sbjct: 135 KHDPNHRVIMHTHATNLIAMTFTHELDEVQFTRTLWQMCTECLVV 179
>sp|O14011|CWF8_SCHPO Cell cycle control protein cwf8
Length = 488
Score = 29.3 bits (64), Expect = 3.7
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 162 EGESTRIQSHRTQSLCLSNVHPNSSISI-QNTTVPCCWFVSSVV 290
E S + H+ + LCL ++ NS++ I + + + CCW SS +
Sbjct: 220 ENSSFVLCLHKDELLCL-DIQSNSTLKIFEGSALACCWLTSSKI 262
>sp|P13528|UNC86_CAEEL Transcription factor unc-86 (Uncoordinated protein 86)
Length = 467
Score = 28.9 bits (63), Expect = 4.8
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +1
Query: 28 SNSSESVSDKCSETSFYEVAPTFFGDFDAMETIRRLQDDIETLNERVKALESSHIEP 198
SN + D + T+ Y+ P+ FDA + DD T ++V A++ S+ P
Sbjct: 176 SNYFSGIHDTSAATNIYQGLPSSSEPFDASVVVPTSSDDQMTPLQQVMAMQQSYGAP 232
>sp|Q8Z4W3|CYSZ_SALTI CysZ protein
Length = 253
Score = 28.1 bits (61), Expect = 8.3
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = +1
Query: 229 IPRSQYRIPLFLVAGLSVALSPILWIIFA 315
+PR+ + L+ + G+ ++P+LW +F+
Sbjct: 147 LPRAIVLLVLYFIPGIGQTIAPVLWFLFS 175
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,157,896
Number of Sequences: 369166
Number of extensions: 729707
Number of successful extensions: 2232
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2232
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)