Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_D15
(683 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07106|ENDR_BOVIN Endozepine-related protein precursor (... 89 8e-18
sp|Q5R7P6|ACBD4_PONPY Acyl-CoA-binding domain-containing pr... 69 1e-11
sp|Q6DGF9|ACBD4_RAT Acyl-CoA-binding domain-containing prot... 68 2e-11
sp|Q8NC06|ACBD4_HUMAN Acyl-CoA-binding domain-containing pr... 68 2e-11
sp|O75521|PECI_HUMAN Peroxisomal 3,2-trans-enoyl-CoA isomer... 55 1e-07
sp|Q9WUR2|PECI_MOUSE Peroxisomal 3,2-trans-enoyl-CoA isomer... 51 2e-06
sp|P12026|ACBP_PIG Acyl-CoA-binding protein (ACBP) (Diazepa... 46 1e-04
sp|P07108|ACBP_HUMAN Acyl-CoA-binding protein (ACBP) (Diaze... 46 1e-04
sp|P07107|ACBP_BOVIN Acyl-CoA-binding protein (ACBP) (Diaze... 45 2e-04
sp|P31786|ACBP_MOUSE Acyl-CoA-binding protein (ACBP) (Diaze... 45 2e-04
>sp|P07106|ENDR_BOVIN Endozepine-related protein precursor (Membrane-associated diazepam
binding inhibitor) (MA-DBI)
Length = 533
Score = 89.4 bits (220), Expect = 8e-18
Identities = 41/102 (40%), Positives = 64/102 (62%)
Frame = +3
Query: 15 CNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLYVEELKKVIETMPHSTEVGNFLQTLG 194
C + +PGFWD VGR KWDAW+++G++ +AM YVEE+KK++ETMP + +V L +G
Sbjct: 84 CKLSKPGFWDPVGRYKWDAWSSLGDMTKEEAMIAYVEEMKKILETMPMTEKVEELLHVIG 143
Query: 195 SFYEVVDCVNSEENDNELSVYQQVGLKLSNSSESVSDKCSET 320
FYE+V+ S + + SV + K+S E + + + T
Sbjct: 144 PFYEIVEDKKSGRSSDLTSVRLE---KISKCLEDLGNVLAST 182
>sp|Q5R7P6|ACBD4_PONPY Acyl-CoA-binding domain-containing protein 4
Length = 269
Score = 68.6 bits (166), Expect = 1e-11
Identities = 25/64 (39%), Positives = 43/64 (67%)
Frame = +3
Query: 15 CNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLYVEELKKVIETMPHSTEVGNFLQTLG 194
C +PRPGFWD +GR KWDAWN++G + +AM+ Y+ E+K V + + + +G + +
Sbjct: 54 CLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMF 113
Query: 195 SFYE 206
+++E
Sbjct: 114 AYFE 117
>sp|Q6DGF9|ACBD4_RAT Acyl-CoA-binding domain-containing protein 4
Length = 326
Score = 68.2 bits (165), Expect = 2e-11
Identities = 25/64 (39%), Positives = 42/64 (65%)
Frame = +3
Query: 15 CNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLYVEELKKVIETMPHSTEVGNFLQTLG 194
C +PRPGFWD +GR KWDAWN++G + +AM+ Y+ E+K V + + + +G + +
Sbjct: 52 CLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMF 111
Query: 195 SFYE 206
++E
Sbjct: 112 GYFE 115
>sp|Q8NC06|ACBD4_HUMAN Acyl-CoA-binding domain-containing protein 4
Length = 268
Score = 68.2 bits (165), Expect = 2e-11
Identities = 25/64 (39%), Positives = 42/64 (65%)
Frame = +3
Query: 15 CNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLYVEELKKVIETMPHSTEVGNFLQTLG 194
C +PRPGFWD +GR KWDAWN++G + +AM+ Y+ E+K V + + + +G + +
Sbjct: 54 CLVPRPGFWDPIGRYKWDAWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAEDMF 113
Query: 195 SFYE 206
++E
Sbjct: 114 GYFE 117
>sp|O75521|PECI_HUMAN Peroxisomal 3,2-trans-enoyl-CoA isomerase (Dodecenoyl-CoA
isomerase) (Delta(3),delta(2)-enoyl-CoA isomerase)
(D3,D2-enoyl-CoA isomerase) (DBI-related protein 1)
(DRS-1) (Hepatocellular carcinoma-associated antigen 88)
Length = 359
Score = 55.5 bits (132), Expect = 1e-07
Identities = 20/52 (38%), Positives = 36/52 (69%)
Frame = +3
Query: 15 CNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLYVEELKKVIETMPHSTEV 170
CN+P+PG +D++ +AKWDAWN +G++P A YV+ + + ++ S++V
Sbjct: 42 CNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYVDLVSSLSPSLESSSQV 93
>sp|Q9WUR2|PECI_MOUSE Peroxisomal 3,2-trans-enoyl-CoA isomerase (Dodecenoyl-CoA
isomerase) (Delta(3),delta(2)-enoyl-CoA isomerase)
(D3,D2-enoyl-CoA isomerase)
Length = 358
Score = 51.2 bits (121), Expect = 2e-06
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +3
Query: 15 CNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLYVE 125
CN+P+PG D V +AKWDAWN +G++P A YV+
Sbjct: 42 CNMPKPGMLDFVNKAKWDAWNALGSLPKETARQNYVD 78
>sp|P12026|ACBP_PIG Acyl-CoA-binding protein (ACBP) (Diazepam-binding inhibitor) (DBI)
(Endozepine) (EP) [Contains: DBI(32-86)]
Length = 86
Score = 45.8 bits (107), Expect = 1e-04
Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 12 ECNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLY---VEELKK 137
+ N RPG D+ G+AKWDAWN + AM Y VEELKK
Sbjct: 38 DINTERPGILDLKGKAKWDAWNGLKGTSKEDAMKAYINKVEELKK 82
>sp|P07108|ACBP_HUMAN Acyl-CoA-binding protein (ACBP) (Diazepam-binding inhibitor) (DBI)
(Endozepine) (EP)
Length = 87
Score = 45.8 bits (107), Expect = 1e-04
Identities = 22/45 (48%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 12 ECNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLY---VEELKK 137
+ N RPG D G+AKWDAWN + AM Y VEELKK
Sbjct: 39 DINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKK 83
>sp|P07107|ACBP_BOVIN Acyl-CoA-binding protein (ACBP) (Diazepam-binding inhibitor) (DBI)
(Endozepine) (EP)
Length = 87
Score = 45.1 bits (105), Expect = 2e-04
Identities = 22/45 (48%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +3
Query: 12 ECNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLY---VEELKK 137
+ N RPG D G+AKWDAWN + AM Y VEELKK
Sbjct: 39 DINTERPGMLDFKGKAKWDAWNELKGTSKEDAMKAYIDKVEELKK 83
>sp|P31786|ACBP_MOUSE Acyl-CoA-binding protein (ACBP) (Diazepam-binding inhibitor) (DBI)
(Endozepine) (EP)
Length = 87
Score = 44.7 bits (104), Expect = 2e-04
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +3
Query: 12 ECNIPRPGFWDVVGRAKWDAWNNMGNIPSSQAMTLYVE---ELKK 137
+ N RPG D+ G+AKWD+WN + AM YVE ELKK
Sbjct: 39 DVNTDRPGLLDLKGKAKWDSWNKLKGTSKESAMKTYVEKVDELKK 83
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,085,196
Number of Sequences: 369166
Number of extensions: 1415301
Number of successful extensions: 4633
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4631
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5830600200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)