Planaria EST Database

DrC_00084

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00084
         (1142 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NEZ4|MLL3_HUMAN  Myeloid/lymphoid or mixed-lineage leuk...    45   5e-04
sp|Q8BRH4|MLL3_MOUSE  Myeloid/lymphoid or mixed-lineage leuk...    44   9e-04
sp|P27398|CAND_DROME  Calpain D (Calcium-activated neutral p...    44   0.001
sp|P32022|GIL1_ENTHI  Galactose-inhibitable lectin 170 kDa s...    41   0.007
sp|Q61220|NELL2_MOUSE  Protein kinase C-binding protein NELL...    40   0.016
sp|P97953|VEGFC_MOUSE  Vascular endothelial growth factor C ...    39   0.021
sp|P49792|RBP2_HUMAN  Ran-binding protein 2 (RanBP2) (Nuclea...    39   0.021
sp|P26012|ITB8_HUMAN  Integrin beta-8 precursor                    39   0.028
sp|P49767|VEGFC_HUMAN  Vascular endothelial growth factor C ...    39   0.028
sp|Q03376|BAR3_CHITE  Balbiani ring protein 3 precursor            39   0.028

>sp|Q8NEZ4|MLL3_HUMAN Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog
           (Histone-lysine N-methyltransferase, H3 lysine-4
           specific MLL3) (Homologous to ALR protein)
          Length = 4911

 Score = 44.7 bits (104), Expect = 5e-04
 Identities = 52/220 (23%), Positives = 76/220 (34%), Gaps = 11/220 (5%)
 Frame = +2

Query: 104 CYACGNINNDLSRLLCQKCFEWKVDVKGESNKDKINADINKSCEKLETWTC--CK----C 265
           C  C +  + L +  C  C +         +   +  DI  +  K   W C  CK    C
Sbjct: 344 CAVCDSPGDLLDQFFCTTCGQ---------HYHGMCLDIAVTPLKRAGWQCPECKVCQNC 394

Query: 266 GNSNNDLTRSICQRCGVSKVDIKGESDVDHIISSYEVIESGDVNKWRCKQCECVNGEECL 445
             S  D    +C  C       KG     H      V++S   N W+CK C       C+
Sbjct: 395 KQSGEDSKMLVCDTCD------KGY----HTFCLQPVMKSVPTNGWKCKNCRI-----CI 439

Query: 446 SCKPCQSPRLEIWSCKQCTMRNKISEDHCAACGEVNENRITK---HCSECKRG-EIICDD 613
            C    S +    +C  C    +  ++ C  CG+     + K   HC+ CKR   + CD 
Sbjct: 440 ECGTRSSSQWH-HNCLICDNCYQQQDNLCPFCGKCYHPELQKDMLHCNMCKRWVHLECDK 498

Query: 614 LCGDCLKVRNK-TWTCSYRFCENRNPGNVKYCKHCGLDRD 730
                L  + K  + C              YCKH G + D
Sbjct: 499 PTDHELDTQLKEEYIC-------------MYCKHLGAEMD 525


 Score = 33.9 bits (76), Expect = 0.90
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 2/106 (1%)
 Frame = +2

Query: 407  CKQCECVNGEECLSCKPCQSPRLEIWSCKQCTMRNKISEDHCAACGEVNENRITKHCSEC 586
            C QC       C+S K  +    + W C +CT+        C ACG+  +      C +C
Sbjct: 977  CSQCGQCYHPYCVSIKITKVVLSKGWRCLECTV--------CEACGKATDPGRLLLCDDC 1028

Query: 587  KRGEIICDDLCGD--CLKVRNKTWTCSYRFCENRNPGNVKYCKHCG 718
               +I     C D     V    W C +            +C+HCG
Sbjct: 1029 ---DISYHTYCLDPPLQTVPKGGWKCKW----------CVWCRHCG 1061

>sp|Q8BRH4|MLL3_MOUSE Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog
           (Histone-lysine N-methyltransferase, H3 lysine-4
           specific MLL3)
          Length = 4903

 Score = 43.9 bits (102), Expect = 9e-04
 Identities = 52/220 (23%), Positives = 76/220 (34%), Gaps = 11/220 (5%)
 Frame = +2

Query: 104 CYACGNINNDLSRLLCQKCFEWKVDVKGESNKDKINADINKSCEKLETWTC--CK----C 265
           C  C +  + L +  C  C +         +   +  DI  +  K   W C  CK    C
Sbjct: 343 CAVCDSPGDLLDQFFCTTCGQ---------HYHGMCLDIAVTPLKRAGWQCPECKVCQNC 393

Query: 266 GNSNNDLTRSICQRCGVSKVDIKGESDVDHIISSYEVIESGDVNKWRCKQCECVNGEECL 445
             S  D    +C  C       KG     H      V++S   N W+CK C       C+
Sbjct: 394 KQSGEDSKMLVCDTCD------KGY----HTFCLQPVMKSVPTNGWKCKNCRI-----CI 438

Query: 446 SCKPCQSPRLEIWSCKQCTMRNKISEDHCAACGEVNENRITK---HCSECKRG-EIICDD 613
            C    S +    +C  C    +  ++ C  CG+     + K   HC+ CKR   + CD 
Sbjct: 439 ECGTRSSTQWH-HNCLICDTCYQQQDNLCPFCGKCYHPELQKDMLHCNMCKRWVHLECDK 497

Query: 614 LCGDCLKVRNK-TWTCSYRFCENRNPGNVKYCKHCGLDRD 730
                L  + K  + C              YCKH G + D
Sbjct: 498 PTDQELDSQLKEDYIC-------------MYCKHLGAEID 524


 Score = 34.3 bits (77), Expect = 0.69
 Identities = 38/160 (23%), Positives = 54/160 (33%), Gaps = 24/160 (15%)
 Frame = +2

Query: 311  GVSKVDIKGESDVDHIISSYEVIESGDVNKWRCKQCECV------NGEE-----CLSCKP 457
            GVS  DI    D +       V+     +K+  +Q  CV       G E     C  C  
Sbjct: 916  GVSAADISSNKDEEENSMHNTVVLFSSSDKFTLQQDMCVVCGSFGQGAEGRLLACSQCGQ 975

Query: 458  CQSP---RLEI--------WSCKQCTMRNKISEDHCAACGEVNENRITKHCSECKRGEII 604
            C  P    ++I        W C +CT+        C ACG+  +      C +C   +I 
Sbjct: 976  CYHPYCVSIKITKVVLSKGWRCLECTV--------CEACGKATDPGRLLLCDDC---DIS 1024

Query: 605  CDDLCGD--CLKVRNKTWTCSYRFCENRNPGNVKYCKHCG 718
                C D     V    W C +            +C+HCG
Sbjct: 1025 YHTYCLDPPLQTVPKGGWKCKW----------CVWCRHCG 1054

>sp|P27398|CAND_DROME Calpain D (Calcium-activated neutral proteinase D) (CANP D) (Small
            optic lobes protein)
          Length = 1594

 Score = 43.5 bits (101), Expect = 0.001
 Identities = 36/147 (24%), Positives = 50/147 (34%), Gaps = 16/147 (10%)
 Frame = +2

Query: 80   GEKQQVWICYACGNINNDLSRLLCQKCFEWKVDVKGESNKDKINADINKSCEKL------ 241
            G + ++WIC  C    N L    C+ C     + K E  + ++     +  ++       
Sbjct: 641  GSRSKMWICIKCSYAYNRLWLQTCEMC-----EAKAEQQQQQLQLQQQQQQQQQHHHHHL 695

Query: 242  ----------ETWTCCKCGNSNNDLTRSICQRCGVSKVDIKGESDVDHIISSYEVIESGD 391
                      E WTC KC   N   T   C  CG SK+           ISS E +    
Sbjct: 696  QQQQAEAPRDEPWTCKKCTLVNYS-TAMACVVCGGSKL---------KSISSIEDMTLRK 745

Query: 392  VNKWRCKQCECVNGEECLSCKPCQSPR 472
               W C  C   N      C  C+S R
Sbjct: 746  GEFWTCSHCTLKNSLHSPVCSACKSHR 772


 Score = 42.0 bits (97), Expect = 0.003
 Identities = 34/156 (21%), Positives = 55/156 (35%)
 Frame = +2

Query: 248  WTCCKCGNSNNDLTRSICQRCGVSKVDIKGESDVDHIISSYEVIESGDVNKWRCKQCECV 427
            W C KC  + N L    C+ C     + K E     +    +            +Q +  
Sbjct: 647  WICIKCSYAYNRLWLQTCEMC-----EAKAEQQQQQLQLQQQ------------QQQQQQ 689

Query: 428  NGEECLSCKPCQSPRLEIWSCKQCTMRNKISEDHCAACGEVNENRITKHCSECKRGEIIC 607
            +    L  +  ++PR E W+CK+CT+ N  +   C  CG      I+             
Sbjct: 690  HHHHHLQQQQAEAPRDEPWTCKKCTLVNYSTAMACVVCGGSKLKSISS------------ 737

Query: 608  DDLCGDCLKVRNKTWTCSYRFCENRNPGNVKYCKHC 715
                 D    + + WTCS+  C  +N  +   C  C
Sbjct: 738  ---IEDMTLRKGEFWTCSH--CTLKNSLHSPVCSAC 768

>sp|P32022|GIL1_ENTHI Galactose-inhibitable lectin 170 kDa subunit
          Length = 1276

 Score = 40.8 bits (94), Expect = 0.007
 Identities = 40/181 (22%), Positives = 70/181 (38%), Gaps = 7/181 (3%)
 Frame = +2

Query: 194  NKDKINADINKSCEKLETWTCCKCGNSNNDLTRSIC--QRCGVSKVDIKGESDVDHIISS 367
            N +  N+  ++ C+   T   CK  N   DL R  C  +RC  +      E+ VD   + 
Sbjct: 602  NGNYCNSKNHEICDYTGTTPQCKVSNCTEDLVRDGCLIKRCNETSKTTYWEN-VDCSNTK 660

Query: 368  YEVIESGDVNKWRCKQ---CECVNGEECLSCKPCQSPRLEIWSCKQCTMR--NKISEDHC 532
             E  +  D ++  CKQ     C+NG+                    C ++    +S   C
Sbjct: 661  IEFAKD-DKSETMCKQYYSTTCLNGK--------------------CVVQAVGDVSNVGC 699

Query: 533  AACGEVNENRITKHCSECKRGEIICDDLCGDCLKVRNKTWTCSYRFCENRNPGNVKYCKH 712
              C    +N IT H  +C   +  C +  G C+K  + +++C +   +  +  +   C  
Sbjct: 700  GYCSMGTDNIITYH-DDCNSRKSQCGNFNGKCIKGSDNSYSCVFEKDKTSSKSDNDICAE 758

Query: 713  C 715
            C
Sbjct: 759  C 759

>sp|Q61220|NELL2_MOUSE Protein kinase C-binding protein NELL2 precursor (NEL-like protein 2)
            (MEL91 protein)
          Length = 816

 Score = 39.7 bits (91), Expect = 0.016
 Identities = 42/143 (29%), Positives = 56/143 (39%), Gaps = 26/143 (18%)
 Frame = +2

Query: 257  CKCGNSNNDLTRSICQRCGVSKVDIKGESDVDHIISSYEVIESGDVNKWRCKQCECVNGE 436
            C C N  +DL  S C  C     D +  S   H  +   V  SGD     C+QC C+ GE
Sbjct: 677  CDCENPTDDL--SCCPEC-----DPRLSSQCLHQ-NGETVYNSGDTWVQDCRQCRCLQGE 728

Query: 437  ECLSCKPCQSPRLEI--------WSCKQC--------TMRNKISEDHCAACGEVNENRIT 568
              + C P   P +E           C +C        T+RN I++       E+N  R T
Sbjct: 729  --VDCWPLACPEVECEFSVLPENECCPRCVTDPCQADTIRNDITK---TCLDEMNVVRFT 783

Query: 569  -----KHCSE-----CKRGEIIC 607
                 KH +E     CK G + C
Sbjct: 784  GSSWIKHGTECTLCQCKNGHLCC 806

>sp|P97953|VEGFC_MOUSE Vascular endothelial growth factor C precursor (VEGF-C) (Vascular
           endothelial growth factor related protein) (VRP) (Flt4
           ligand) (Flt4-L)
          Length = 415

 Score = 39.3 bits (90), Expect = 0.021
 Identities = 49/189 (25%), Positives = 65/189 (34%), Gaps = 24/189 (12%)
 Frame = +2

Query: 221 NKSCEKLETWT--CCKC---------GNSNNDLTRSICQRCGVSKVDIKGESDVDHIISS 367
           NK+C     W    C+C          N  +D T      CG +K     E D D     
Sbjct: 236 NKTCPTNYVWNNYMCRCLAQQDFIFYSNVEDDSTNGFHDVCGPNK-----ELDEDTC--- 287

Query: 368 YEVIESGDVNKWRCKQCECVNGEECLSCKPCQSPRLEIWSCKQCTMRNKISEDHCAACGE 547
                          QC C  G    SC P +   L+  SC QC  +NK+  + C A  E
Sbjct: 288 ---------------QCVCKGGLRPSSCGPHKE--LDRDSC-QCVCKNKLFPNSCGANRE 329

Query: 548 VNENRITKHCSE-CKRGEIICDDLCG-DCL-----------KVRNKTWTCSYRFCENRNP 688
            +EN     C   C R + +    C  +C            K  ++T +C  R C NR  
Sbjct: 330 FDENTCQCVCKRTCPRNQPLNPGKCACECTENTQKCFLKGKKFHHQTCSCYRRPCANR-- 387

Query: 689 GNVKYCKHC 715
                 KHC
Sbjct: 388 -----LKHC 391

>sp|P49792|RBP2_HUMAN Ran-binding protein 2 (RanBP2) (Nuclear pore complex protein Nup358)
            (Nucleoporin Nup358) (358 kDa nucleoporin) (P270)
          Length = 3224

 Score = 39.3 bits (90), Expect = 0.021
 Identities = 59/285 (20%), Positives = 87/285 (30%), Gaps = 58/285 (20%)
 Frame = +2

Query: 77   FGEKQQVWICYACGNINNDLSRLLCQKC-----------------FEWKVDVKGESNKDK 205
            F +K+  W C +C  + N+ +   C  C                 F++      ++ K  
Sbjct: 1540 FAKKEGQWDCSSC-LVRNEANATRCVACQNPDKPSPSTSVPAPASFKFGTSETSKAPKSG 1598

Query: 206  INADINKSCEKLETWTCCKCGNSNN-DLTRSI-CQRCG-----VSKVDIKGESDVDHIIS 364
                  K   K   W C  C   N    T+ I CQ  G      S V     S+      
Sbjct: 1599 FEGMFTK---KEGQWDCSVCLVRNEASATKCIACQNPGKQNQTTSAVSTPASSETSKAPK 1655

Query: 365  S-YEVIESGDVNKWRCKQCECVNGEECLSCKPCQSPRLEI-------------------- 481
            S +E + +    +W C  C   N      C  CQ+P  +                     
Sbjct: 1656 SGFEGMFTKKEGQWDCSVCLVRNEASATKCIACQNPGKQNQTTSAVSTPASSETSKAPKS 1715

Query: 482  ------------WSCKQCTMRNKISEDHCAACGEVNENRITKHCSECKRGEIICDDLCG- 622
                        W C  C +RN+ S   C AC   ++   T   S     EI      G 
Sbjct: 1716 GFEGMFTKKEGQWDCSVCLVRNEASATKCIACQCPSKQNQTTAISTPASSEISKAPKSGF 1775

Query: 623  DCLKVRNKTWTCSYRFCENRNPGNVKYCKHCGLDRDARKIDIGAP 757
            + + +R   W CS   C  +N  +   C  C   +   K    AP
Sbjct: 1776 EGMFIRKGQWDCS--VCCVQNESSSLKCVACDASKPTHKPIAEAP 1818


 Score = 35.8 bits (81), Expect = 0.24
 Identities = 43/199 (21%), Positives = 59/199 (29%), Gaps = 53/199 (26%)
 Frame = +2

Query: 104  CYACGNINNDLSRLLCQKCFEWKVDVKG--ESNKDKINADINKSCEKLETWTCCKCGNSN 277
            C +C N+N     L+     E     K   E+ +D+      K   K   W C  C    
Sbjct: 1372 CVSCQNLNPSNKELVGPPLAETVFTPKTSPENVQDRFALVTPK---KEGHWDCSIC-LVR 1427

Query: 278  NDLTRSICQRCGVSKVDIKGESDVDH--------------IISSYEVIESGDVNKWRCKQ 415
            N+ T S C  C  +K   K  S   H              I S +  + S    +W C  
Sbjct: 1428 NEPTVSRCIACQNTKSANKSGSSFVHQASFKFGQGDLPKPINSDFRSVFSTKEGQWDCSA 1487

Query: 416  CECVNGEECLSCKPCQSPRLEI-------------------------------------W 484
            C   N      C  CQ+PR +                                      W
Sbjct: 1488 CLVQNEGSSTKCAACQNPRKQSLPATSIPTPASFKFGTSETSKTLKSGFEDMFAKKEGQW 1547

Query: 485  SCKQCTMRNKISEDHCAAC 541
             C  C +RN+ +   C AC
Sbjct: 1548 DCSSCLVRNEANATRCVAC 1566


 Score = 30.8 bits (68), Expect = 7.6
 Identities = 31/146 (21%), Positives = 46/146 (31%), Gaps = 25/146 (17%)
 Frame = +2

Query: 482  WSCKQCTMRNKISEDHCAACGEVNENR-------ITKHCSECKRGEIICDDLCGDCLKVR 640
            W C  C+++N  +   C +C  +N +        + +     K       D        +
Sbjct: 1356 WHCNSCSLKNASTAKKCVSCQNLNPSNKELVGPPLAETVFTPKTSPENVQDRFALVTPKK 1415

Query: 641  NKTWTCSYRFCENRNPGNVKYCKHCGLDRDARKIDIG----APMWRCTGDVpreI----- 793
               W CS   C  RN   V  C  C   + A K        A      GD+P+ I     
Sbjct: 1416 EGHWDCS--ICLVRNEPTVSRCIACQNTKSANKSGSSFVHQASFKFGQGDLPKPINSDFR 1473

Query: 794  ---------WICDKCYDINDISHSYC 844
                     W C  C   N+ S + C
Sbjct: 1474 SVFSTKEGQWDCSACLVQNEGSSTKC 1499

>sp|P26012|ITB8_HUMAN Integrin beta-8 precursor
          Length = 769

 Score = 38.9 bits (89), Expect = 0.028
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
 Frame = +2

Query: 407 CKQCECVN----GEECLSCKPCQSPRLEIWSCKQCTMRNKISE---DHC-AACGEVNENR 562
           C +CEC +    G  C  C  C +   E W+C QC   + +S+   D C  +C  + +  
Sbjct: 609 CGRCECTDPRSIGRFCEHCPTCYTACKENWNCMQCLHPHNLSQAILDQCKTSCALMEQQH 668

Query: 563 ITKHCSEC 586
                SEC
Sbjct: 669 YVDQTSEC 676


 Score = 30.8 bits (68), Expect = 7.6
 Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 44/214 (20%)
 Frame = +2

Query: 389  DVNKWRCKQCECVNGEECLSCKPCQSPRLE-------IWSCKQCTMRN----KISEDHCA 535
            D   ++C + +C   E+  S + C+S + +       +  C +C+       K+   +C 
Sbjct: 488  DSKCFQCDENKCHFDEDQFSSESCKSHKDQPVCSGRGVCVCGKCSCHKIKLGKVYGKYCE 547

Query: 536  ----ACGEVNENRITKHCSECKRGEIIC-----DDLCG-------DCLKVRNKTW----T 655
                +C   + N    H  EC+ G   C      D C         C+  + +      T
Sbjct: 548  KDDFSCPYHHGNLCAGH-GECEAGRCQCFSGWEGDRCQCPSAAAQHCVNSKGQVCSGRGT 606

Query: 656  CSYRFCENRNPGNV-KYCKHCGLDRDARKIDIGAPMWRCTGDVpreIWICDKCYDINDIS 832
            C    CE  +P ++ ++C+HC     A K                E W C +C   +++S
Sbjct: 607  CVCGRCECTDPRSIGRFCEHCPTCYTACK----------------ENWNCMQCLHPHNLS 650

Query: 833  HSYC------------RHKISHYSTCFNKPKYTK 898
             +              +H +   S CF+ P Y +
Sbjct: 651  QAILDQCKTSCALMEQQHYVDQTSECFSSPSYLR 684

>sp|P49767|VEGFC_HUMAN Vascular endothelial growth factor C precursor (VEGF-C) (Vascular
           endothelial growth factor related protein) (VRP) (Flt4
           ligand) (Flt4-L)
          Length = 419

 Score = 38.9 bits (89), Expect = 0.028
 Identities = 46/168 (27%), Positives = 67/168 (39%), Gaps = 14/168 (8%)
 Frame = +2

Query: 221 NKSCEKLETWTCCKCGNSNNDLTRSICQRCGVSKVDIKGES-DVDHIISSYEVIESGDVN 397
           NK+C     W        NN + R + Q   +   D   +S D  H I       + +++
Sbjct: 240 NKTCPTNYMW--------NNHICRCLAQEDFMFSSDAGDDSTDGFHDICG----PNKELD 287

Query: 398 KWRCKQCECVNGEECLSCKPCQSPRLEIWSCKQCTMRNKISEDHCAACGEVNENRITKHC 577
           +  C QC C  G    SC P +   L+  SC QC  +NK+    C A  E +EN     C
Sbjct: 288 EETC-QCVCRAGLRPASCGPHKE--LDRNSC-QCVCKNKLFPSQCGANREFDENTCQCVC 343

Query: 578 SE-CKRGEII--------CDDLCGDCL----KVRNKTWTCSYRFCENR 682
              C R + +        C +    CL    K  ++T +C  R C NR
Sbjct: 344 KRTCPRNQPLNPGKCACECTESPQKCLLKGKKFHHQTCSCYRRPCTNR 391

>sp|Q03376|BAR3_CHITE Balbiani ring protein 3 precursor
          Length = 1700

 Score = 38.9 bits (89), Expect = 0.028
 Identities = 64/238 (26%), Positives = 84/238 (35%), Gaps = 53/238 (22%)
 Frame = +2

Query: 128  NDLSRLLCQKCFEW-KVDVKGESNKDKINADINKSCEKLETWTC--CKCGNSN------- 277
            N  S   C    EW KV    + N  K +      C   + W    CKCG  N       
Sbjct: 842  NSASMKTCLSPKEWNKVTCTCDCNPPKPDC-----CPGTQKWMDDKCKCGCPNAQTDCAG 896

Query: 278  ----NDLTRSICQRCGVSKVDIKGESDVDHIISSYEVIESGDVNKWRCK----------Q 415
                ND T S    C   K+D  G +      +       GDVN+  C           Q
Sbjct: 897  GKKFNDFTCSC--GCPSGKLDCTGNTKWS---AETCTCGCGDVNR-NCGNLKNFNDNLCQ 950

Query: 416  CECVNGEECLSCKPCQSPRLEIWSCKQCTMRNKISEDHC----------AACG------- 544
            CEC N +E  +CK   SPR   +   +C  +N    D C            CG       
Sbjct: 951  CECKNKQEMANCK---SPRTWNYDTCKCVCKNADDSDDCVKPQIWLDDQCKCGCPASAQM 1007

Query: 545  --EVNENRITKHCS-ECK--------RGEIICDDLC-GDCLKVRNKTWTCSYRFCENR 682
                N+  I K CS ECK        +G+   +D C  +C  V  KT     R+C+N+
Sbjct: 1008 TCPANKRFIEKSCSCECKSPMPSPIPQGKKWNEDKCVVECANV--KTCEGPQRWCDNQ 1063

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,944,451
Number of Sequences: 369166
Number of extensions: 2756493
Number of successful extensions: 8973
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8889
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12774128880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00084

  1. Dr_sW_003_D07
  2. Dr_sW_012_G19