Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_G19
(557 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 (HD6) (Histone ... 37 0.033
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor 35 0.096
sp|P04930|HRP_PLAFF Small histidine-alanine-rich protein pr... 34 0.28
sp|P05228|HRP2_PLAFA HISTIDINE-RICH PROTEIN preCURSOR (CLON... 34 0.28
sp|Q9Y5T5|UBP16_HUMAN Ubiquitin carboxyl-terminal hydrolase... 33 0.62
sp|P0A1S8|YAJD_SALTY Hypothetical protein yajD >gi|60416306... 32 0.81
sp|P0AAQ5|YAJD_SHIFL Hypothetical protein yajD >gi|77416721... 32 0.81
sp|O35986|ZN265_RAT Zinc finger protein 265 (Zinc finger, s... 32 0.81
sp|O95218|ZN265_HUMAN Zinc finger protein 265 (Zinc finger,... 32 0.81
sp|Q9R020|ZN265_MOUSE Zinc finger protein 265 (Zinc finger,... 32 1.1
>sp|Q9Z2V5|HDAC6_MOUSE Histone deacetylase 6 (HD6) (Histone deacetylase mHDA2)
Length = 1149
Score = 37.0 bits (84), Expect = 0.033
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Frame = +2
Query: 146 ARKIDIGAPMWRCTGDVpreIWICDKC------SYINDISHSYCRHKISHYSTCFNKPKY 307
A +D+ P C G V +E W+C C Y+N +H C H+ S + +
Sbjct: 1058 AAGLDVSQPCKTC-GTV-QENWVCLTCYQVYCSRYVN--AHMVCHHEASEHPLVLSCVDL 1113
Query: 308 TKWCYECQYRYNHEN 352
+ WCY CQ Y H++
Sbjct: 1114 STWCYVCQ-AYVHQD 1127
>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor
Length = 351
Score = 35.4 bits (80), Expect = 0.096
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Frame = -1
Query: 242 YH*YKNIYHKSIFHEAHHQYTSTLEHQYRFYEHLDRVHNACNILHFQD---FHSHKIDTN 72
+H + +H H+AHH + H + + H H+A + H D H H D +
Sbjct: 269 HHHHDAHHHHHHHHDAHHHH----HHHHDAHHHHHHHHDAHHHHHHHDAHHHHHHHHDAH 324
Query: 71 KSKFYLEPSNNPHKDHHK*SHH 6
+ +++ H HH HH
Sbjct: 325 HHHHHHHDAHHHHHHHHDAHHH 346
Score = 34.7 bits (78), Expect = 0.16
Identities = 18/79 (22%), Positives = 33/79 (41%)
Frame = -1
Query: 242 YH*YKNIYHKSIFHEAHHQYTSTLEHQYRFYEHLDRVHNACNILHFQDFHSHKIDTNKSK 63
+H + +H H+AHH + + + + H D H+ + H H H D +
Sbjct: 259 HHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHD-AHHHHHHHHDAHHHHHHHDAHHHH 317
Query: 62 FYLEPSNNPHKDHHK*SHH 6
+ +++ H HH HH
Sbjct: 318 HHHHDAHHHHHHHHDAHHH 336
Score = 34.3 bits (77), Expect = 0.21
Identities = 17/71 (23%), Positives = 26/71 (36%)
Frame = -1
Query: 218 HKSIFHEAHHQYTSTLEHQYRFYEHLDRVHNACNILHFQDFHSHKIDTNKSKFYLEPSNN 39
H HE HH + H+ EH + H ++ H H + + P ++
Sbjct: 53 HPEHLHEEHHHHHPEEHHEPHHEEHHHHHPEEHHEPHHEEHHHHHPHPHHHHHHHPPHHH 112
Query: 38 PHKDHHK*SHH 6
H HH HH
Sbjct: 113 HHLGHHHHHHH 123
Score = 34.3 bits (77), Expect = 0.21
Identities = 17/79 (21%), Positives = 31/79 (39%)
Frame = -1
Query: 242 YH*YKNIYHKSIFHEAHHQYTSTLEHQYRFYEHLDRVHNACNILHFQDFHSHKIDTNKSK 63
+H + + +H H HH + H + + H D H+ + H H D +
Sbjct: 219 HHHHGHHHHHHHHHGHHHHHHHHHGHHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHH 278
Query: 62 FYLEPSNNPHKDHHK*SHH 6
+ +++ H HH HH
Sbjct: 279 HHHHDAHHHHHHHHDAHHH 297
Score = 33.5 bits (75), Expect = 0.36
Identities = 17/79 (21%), Positives = 32/79 (40%)
Frame = -1
Query: 242 YH*YKNIYHKSIFHEAHHQYTSTLEHQYRFYEHLDRVHNACNILHFQDFHSHKIDTNKSK 63
+H + + +H H+AHH + + + + H D H+ H H D +
Sbjct: 239 HHHHGHHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHH----------HHHHHDAHHHH 288
Query: 62 FYLEPSNNPHKDHHK*SHH 6
+ +++ H HH HH
Sbjct: 289 HHHHDAHHHHHHHHDAHHH 307
Score = 32.0 bits (71), Expect = 1.1
Identities = 16/79 (20%), Positives = 29/79 (36%)
Frame = -1
Query: 242 YH*YKNIYHKSIFHEAHHQYTSTLEHQYRFYEHLDRVHNACNILHFQDFHSHKIDTNKSK 63
+H + +H H HH + H + + H H+ + H H D +
Sbjct: 199 HHHHAPHHHHHHHHAPHHHHHHHHGHHHHHHHHHGHHHHHHHHHGHHHHHHHHHDAHHHH 258
Query: 62 FYLEPSNNPHKDHHK*SHH 6
+ +++ H HH HH
Sbjct: 259 HHHHDAHHHHHHHHDAHHH 277
Score = 31.6 bits (70), Expect = 1.4
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = -1
Query: 242 YH*YKNIYHKSIFHEAHHQYTSTLEHQYRFYEHLDRVHNACNILHFQDFHSHKIDTNKSK 63
+H + +H H+AHH + + + + H D H+ + H H D +
Sbjct: 249 HHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHH 308
Query: 62 FYLEPSNNPHKDHHK*SHH 6
+ + ++ H HH +HH
Sbjct: 309 HHHDAHHHHH--HHHDAHH 325
Score = 29.6 bits (65), Expect = 5.3
Identities = 17/80 (21%), Positives = 29/80 (36%)
Frame = -1
Query: 245 KYH*YKNIYHKSIFHEAHHQYTSTLEHQYRFYEHLDRVHNACNILHFQDFHSHKIDTNKS 66
++H + + H E HH + + H + + HL H+ H H H
Sbjct: 132 EHHHHHHAAHHHHHEEHHHHHHAAHHHPWFHHHHLGYHHH-----HAPHHHHHHHHAPHH 186
Query: 65 KFYLEPSNNPHKDHHK*SHH 6
+ + + H HH HH
Sbjct: 187 HHHHHHAPHHHHHHHHAPHH 206
Score = 29.3 bits (64), Expect = 6.9
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Frame = -1
Query: 242 YH*YKNIYHKSIFHEA--HHQYTSTLEHQYRFYEHLDRVHNACNILHFQDFHSHKIDTNK 69
YH + +H H A HH + H + + H H+ + H H H +
Sbjct: 168 YHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHH--HAPHHHHHHHHGHH 225
Query: 68 SKFYLEPSNNPHKDHHK*SHH 6
+ ++ H HH HH
Sbjct: 226 HHHHHHHGHHHHHHHHHGHHH 246
Score = 28.9 bits (63), Expect = 9.0
Identities = 17/79 (21%), Positives = 28/79 (35%)
Frame = -1
Query: 242 YH*YKNIYHKSIFHEAHHQYTSTLEHQYRFYEHLDRVHNACNILHFQDFHSHKIDTNKSK 63
+H + +H H HH H+ + H H+ H +H H +
Sbjct: 120 HHHHAAHHHHHEEHHHHHHAAHHHHHEEHHHHHHAAHHHPWFHHHHLGYHHHHAPHHHHH 179
Query: 62 FYLEPSNNPHKDHHK*SHH 6
+ P ++ H HH HH
Sbjct: 180 HHHAPHHH-HHHHHAPHHH 197
Score = 28.9 bits (63), Expect = 9.0
Identities = 15/72 (20%), Positives = 25/72 (34%)
Frame = -1
Query: 221 YHKSIFHEAHHQYTSTLEHQYRFYEHLDRVHNACNILHFQDFHSHKIDTNKSKFYLEPSN 42
+H + H HH + H + H H+ H H H + + +
Sbjct: 190 HHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHH-----HGHHHHHHHHHGHHHHHHHHHGH 244
Query: 41 NPHKDHHK*SHH 6
+ H HH +HH
Sbjct: 245 HHHHHHHHDAHH 256
>sp|P04930|HRP_PLAFF Small histidine-alanine-rich protein precursor (SHARP) (Antigen 57)
Length = 221
Score = 33.9 bits (76), Expect = 0.28
Identities = 20/73 (27%), Positives = 28/73 (38%)
Frame = -1
Query: 239 H*YKNIYHKSIFHEAHHQYTSTLEHQYRFYEHLDRVHNACNILHFQDFHSHKIDTNKSKF 60
H N +H + H A + + + H H H+A N H + H H D N
Sbjct: 94 HHAANAHHAANAHHAANAHHAANAHHAANAHHAANAHHAANAHHAANAH-HAADANHGFH 152
Query: 59 YLEPSNNPHKDHH 21
+ NN H HH
Sbjct: 153 FNLHDNNSHTLHH 165
>sp|P05228|HRP2_PLAFA HISTIDINE-RICH PROTEIN preCURSOR (CLONE PFHRP-III)
Length = 241
Score = 33.9 bits (76), Expect = 0.28
Identities = 20/73 (27%), Positives = 28/73 (38%)
Frame = -1
Query: 239 H*YKNIYHKSIFHEAHHQYTSTLEHQYRFYEHLDRVHNACNILHFQDFHSHKIDTNKSKF 60
H N +H + H A + + + H H H+A N H + H H D N
Sbjct: 109 HHAANAHHAANAHHAANAHHAANAHHAANAHHAANAHHAANAHHAANAH-HAADANHGFH 167
Query: 59 YLEPSNNPHKDHH 21
+ NN H HH
Sbjct: 168 FNLHDNNSHTLHH 180
>sp|Q9Y5T5|UBP16_HUMAN Ubiquitin carboxyl-terminal hydrolase 16 (Ubiquitin thiolesterase
16) (Ubiquitin-specific processing protease 16)
(Deubiquitinating enzyme 16) (Ubiquitin processing
protease UBP-M)
Length = 823
Score = 32.7 bits (73), Expect = 0.62
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = +2
Query: 206 IWICDKCSYINDISHSYCRHKISHYSTCFNKP--------KYTKWCYEC 328
+W+C KC + +S +H + HY T ++P ++ WCY C
Sbjct: 71 VWLCLKCGHQGCGRNSQEQHALKHYLTPRSEPHCLVLSLDNWSVWCYVC 119
>sp|P0A1S8|YAJD_SALTY Hypothetical protein yajD
sp|P0A1S9|YAJD_SALTI Hypothetical protein yajD
Length = 115
Score = 32.3 bits (72), Expect = 0.81
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +2
Query: 209 WICDKCS--YINDISHSYCRHKISHYSTCFNKPKY-TKWCYECQYRYNHENSKY 361
W+C +CS ++ H I H T N P+ + W C Y ++HE+SKY
Sbjct: 25 WVCGRCSREFVYSNLRELTVHHIDHDHT--NNPEDGSNWELLCLYCHDHEHSKY 76
>sp|P0AAQ5|YAJD_SHIFL Hypothetical protein yajD
sp|P0AAQ2|YAJD_ECOLI Hypothetical protein yajD
sp|P0AAQ3|YAJD_ECOL6 Hypothetical protein yajD
sp|P0AAQ4|YAJD_ECO57 Hypothetical protein yajD
Length = 115
Score = 32.3 bits (72), Expect = 0.81
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +2
Query: 209 WICDKCS--YINDISHSYCRHKISHYSTCFNKPKY-TKWCYECQYRYNHENSKY 361
W+C +CS ++ H I H T N P+ + W C Y ++HE+SKY
Sbjct: 25 WVCGRCSREFVYSNLRELTVHHIDHDHT--NNPEDGSNWELLCLYCHDHEHSKY 76
>sp|O35986|ZN265_RAT Zinc finger protein 265 (Zinc finger, splicing)
Length = 332
Score = 32.3 bits (72), Expect = 0.81
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Frame = +2
Query: 47 KVRDKTWTCWYRFCENGNPGNVKYCKHCGLDR--DARKIDIGAP------MWRCTGDVPR 202
+V D W C + C N N C CG ++ +A+ + G + G
Sbjct: 7 RVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSA 66
Query: 203 EIWICDKCSYINDISHSYCRHKISHYSTCFNKPKYTK 313
W C CS +N S C + C N PKY K
Sbjct: 67 NDWQCKTCSNVNWARRSEC-------NMC-NTPKYAK 95
>sp|O95218|ZN265_HUMAN Zinc finger protein 265 (Zinc finger, splicing)
Length = 337
Score = 32.3 bits (72), Expect = 0.81
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Frame = +2
Query: 47 KVRDKTWTCWYRFCENGNPGNVKYCKHCGLDR--DARKIDIGAP------MWRCTGDVPR 202
+V D W C + C N N C CG ++ +A+ + G + G
Sbjct: 7 RVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSA 66
Query: 203 EIWICDKCSYINDISHSYCRHKISHYSTCFNKPKYTK 313
W C CS +N S C + C N PKY K
Sbjct: 67 NDWQCKTCSNVNWARRSEC-------NMC-NTPKYAK 95
>sp|Q9R020|ZN265_MOUSE Zinc finger protein 265 (Zinc finger, splicing)
Length = 326
Score = 32.0 bits (71), Expect = 1.1
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 8/97 (8%)
Frame = +2
Query: 47 KVRDKTWTCWYRFCENGNPGNVKYCKHCGLDR--DARKIDIGAP------MWRCTGDVPR 202
+V D W C + C N N C CG ++ +A+ + G + G
Sbjct: 7 RVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSA 66
Query: 203 EIWICDKCSYINDISHSYCRHKISHYSTCFNKPKYTK 313
W C CS +N S C C N PKY K
Sbjct: 67 NDWQCKTCSNVNWARRSEC-------DMC-NTPKYAK 95
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,560,712
Number of Sequences: 369166
Number of extensions: 1339521
Number of successful extensions: 4103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4044
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)