Planaria EST Database

DrC_00068

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00068
         (463 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9DHR2|MP44_YLDV  Probable metalloendopeptidase G1-type         32   0.53 
sp|Q8MJ04|RP1_CANFA  Oxygen-regulated protein 1 (Retinitis p...    28   9.9  
sp|P47042|KJF7_YEAST  Probable serine/threonine-protein kina...    28   9.9  

>sp|Q9DHR2|MP44_YLDV Probable metalloendopeptidase G1-type
          Length = 590

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
 Frame = +1

Query: 1   NGFLNFLKFVKFQQNLFGDL--------LLRGFLIIS*PNFSKIVYYSNKSICE--IEIK 150
           N   N+L  V++ QN+F +L        LL+ ++++  P+FSK V+  N S     + + 
Sbjct: 304 NDINNYLSTVRYSQNMFKNLEEDIQNSILLKKYIVVY-PHFSKTVFNKNDSQMHKIVILD 362

Query: 151 CFLEPNQSQIVRMEI 195
           C  E  + Q+ ++ +
Sbjct: 363 CLNEIKEDQLPKLNV 377

>sp|Q8MJ04|RP1_CANFA Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein homolog)
          Length = 2141

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -2

Query: 450  FYFYENQNLRLYEQNKKYKLKKND 379
            FY +E++NL ++E+  ++ L+ ND
Sbjct: 2115 FYVFEDENLFIWEEESQFDLESND 2138

>sp|P47042|KJF7_YEAST Probable serine/threonine-protein kinase YJL057C
          Length = 667

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 180 CKNGNLDDCYQLKIFNQLNNS 242
           C  GNL+DC   K+FN+ +++
Sbjct: 277 CSGGNLEDCILRKVFNRFSDT 297

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,681,740
Number of Sequences: 369166
Number of extensions: 372125
Number of successful extensions: 876
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00068

  1. Dr_sW_002_L15
  2. Dr_sW_024_J02