Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_L15
(463 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9DHR2|MP44_YLDV Probable metalloendopeptidase G1-type 32 0.53
sp|Q8MJ04|RP1_CANFA Oxygen-regulated protein 1 (Retinitis p... 28 9.9
sp|P47042|KJF7_YEAST Probable serine/threonine-protein kina... 28 9.9
>sp|Q9DHR2|MP44_YLDV Probable metalloendopeptidase G1-type
Length = 590
Score = 32.3 bits (72), Expect = 0.53
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 10/75 (13%)
Frame = +1
Query: 1 NGFLNFLKFVKFQQNLFGDL--------LLRGFLIIS*PNFSKIVYYSNKSICE--IEIK 150
N N+L V++ QN+F +L LL+ ++++ P+FSK V+ N S + +
Sbjct: 304 NDINNYLSTVRYSQNMFKNLEEDIQNSILLKKYIVVY-PHFSKTVFNKNDSQMHKIVILD 362
Query: 151 CFLEPNQSQIVRMEI 195
C E + Q+ ++ +
Sbjct: 363 CLNEIKEDQLPKLNV 377
>sp|Q8MJ04|RP1_CANFA Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein homolog)
Length = 2141
Score = 28.1 bits (61), Expect = 9.9
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -2
Query: 450 FYFYENQNLRLYEQNKKYKLKKND 379
FY +E++NL ++E+ ++ L+ ND
Sbjct: 2115 FYVFEDENLFIWEEESQFDLESND 2138
>sp|P47042|KJF7_YEAST Probable serine/threonine-protein kinase YJL057C
Length = 667
Score = 28.1 bits (61), Expect = 9.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 180 CKNGNLDDCYQLKIFNQLNNS 242
C GNL+DC K+FN+ +++
Sbjct: 277 CSGGNLEDCILRKVFNRFSDT 297
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,387,041
Number of Sequences: 369166
Number of extensions: 386850
Number of successful extensions: 899
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)