Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_J02
(454 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9DHR2|MP44_YLDV Probable metalloendopeptidase G1-type 32 0.85
sp|Q8MJ04|RP1_CANFA Oxygen-regulated protein 1 (Retinitis p... 28 9.4
sp|P47042|KJF7_YEAST Probable serine/threonine-protein kina... 28 9.4
>sp|Q9DHR2|MP44_YLDV Probable metalloendopeptidase G1-type
Length = 590
Score = 31.6 bits (70), Expect = 0.85
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Frame = +1
Query: 4 NFLKFVKFQQNLFGDL--------LLRGFLIIS*PNFSKIVYYSNKSICE--IEIKCFLE 153
N+L V++ QN+F +L LL+ ++++ P+FSK V+ N S + + C E
Sbjct: 308 NYLSTVRYSQNMFKNLEEDIQNSILLKKYIVVY-PHFSKTVFNKNDSQMHKIVILDCLNE 366
Query: 154 PNQSQIVRMEI 186
+ Q+ ++ +
Sbjct: 367 IKEDQLPKLNV 377
>sp|Q8MJ04|RP1_CANFA Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein homolog)
Length = 2141
Score = 28.1 bits (61), Expect = 9.4
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = -2
Query: 441 FYFYENQNLRLYEQNKKYKLKKND 370
FY +E++NL ++E+ ++ L+ ND
Sbjct: 2115 FYVFEDENLFIWEEESQFDLESND 2138
>sp|P47042|KJF7_YEAST Probable serine/threonine-protein kinase YJL057C
Length = 667
Score = 28.1 bits (61), Expect = 9.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 171 CKNGNLDDCYQLKIFNQLNNS 233
C GNL+DC K+FN+ +++
Sbjct: 277 CSGGNLEDCILRKVFNRFSDT 297
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,673,002
Number of Sequences: 369166
Number of extensions: 355151
Number of successful extensions: 870
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)