Planaria EST Database


DrC_00062

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00062
         (1074 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q14978|NOLC1_HUMAN  Nucleolar phosphoprotein p130 (Nucleo...    33   1.1  
sp|Q8LE10|A22I_ARATH  HVA22-like protein i (AtHVA22i)              32   3.1  
sp|Q6PCX9|TRI37_MOUSE  Tripartite motif protein 37                 31   5.3  
sp|O94972|TRI37_HUMAN  Tripartite motif protein 37 (Mulibrey...    31   5.3  
>sp|Q14978|NOLC1_HUMAN Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein) (140 kDa
           nucleolar phosphoprotein) (Nopp140) (Nucleolar and
           coiled-body phosphoprotein 1)
          Length = 699

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +1

Query: 217 TPKKRTPMKKLFAKSPAKAVDSPVILTNIGTFRLSQSDMTSDSDNDVIEKR 369
           TPKK  P K++ AK+P KA  +P         R S S   S SD +  +K+
Sbjct: 238 TPKKTVPKKQVVAKAPVKAATTPT--------RKSSSSEDSSSDEEEEQKK 280
>sp|Q8LE10|A22I_ARATH HVA22-like protein i (AtHVA22i)
          Length = 296

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +1

Query: 202 VAGKETPKKRTPMKK--LFAKSPAKAVDSPVILTNIGTFRLSQSDMTSDSDNDVIEKRRK 375
           VA + TP+ + P K+     ++PAK   +PV  +      LS S  +S S+N+  E  RK
Sbjct: 142 VAAQSTPRPQPPQKRGGRANQAPAKPKKAPVPQSEPEEVSLSSSSSSSSSENEGNEPTRK 201

Query: 376 I 378
           +
Sbjct: 202 V 202
>sp|Q6PCX9|TRI37_MOUSE Tripartite motif protein 37
          Length = 961

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 288 YRAINSFCW*FSKQFLHWCSLFGGFFTGH---QKSIWFKRHAVKLEE 157
           +  ++ FCW   K   H C+L+GG   GH     +  +++H  K+ E
Sbjct: 99  HEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNE 145
>sp|O94972|TRI37_HUMAN Tripartite motif protein 37 (Mulibrey nanism protein)
          Length = 964

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 288 YRAINSFCW*FSKQFLHWCSLFGGFFTGH---QKSIWFKRHAVKLEE 157
           +  ++ FCW   K   H C+L+GG   GH     +  +++H  K+ E
Sbjct: 99  HEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHVTKVNE 145
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,011,996
Number of Sequences: 369166
Number of extensions: 2060028
Number of successful extensions: 4627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4626
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 11677841700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00062

  1. Dr_sW_002_H06
  2. Dr_sW_024_D01
  3. Dr_sW_018_O22
  4. Dr_sW_015_I13
  5. Dr_sW_006_E06
  6. Dr_sW_012_J12