Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_D01
(661 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23382|INA_BACTL Immune inhibitor A precursor 30 5.6
sp|P03110|VL2_PAPVD Minor capsid protein L2 29 9.5
>sp|P23382|INA_BACTL Immune inhibitor A precursor
Length = 687
Score = 30.0 bits (66), Expect = 5.6
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 429 SAAAKNRHFFSPSINGNFLNTIFV--QKHRKTVGFRTYL 319
S + +N+ FF +I GN+ N + V +K K +G TYL
Sbjct: 311 SFSPQNKEFFQKTIGGNWANIVEVDYEKLNKGIGLATYL 349
>sp|P03110|VL2_PAPVD Minor capsid protein L2
Length = 493
Score = 29.3 bits (64), Expect = 9.5
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 121 ILSETRGRLNIFMEIGGVGAWVFRDCELTYRG 216
I++ET G NIF+ GGVG+ + ELT G
Sbjct: 203 IIAETSGSENIFVGGGGVGSTTGEEIELTLFG 234
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,688,347
Number of Sequences: 369166
Number of extensions: 1287351
Number of successful extensions: 3079
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3078
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5511356910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)