Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_J12
(893 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14978|NOLC1_HUMAN Nucleolar phosphoprotein p130 (Nucleo... 33 0.82
sp|Q8LE10|A22I_ARATH HVA22-like protein i (AtHVA22i) 32 2.4
sp|Q6PCX9|TRI37_MOUSE Tripartite motif protein 37 30 7.0
sp|O94972|TRI37_HUMAN Tripartite motif protein 37 (Mulibrey... 30 7.0
>sp|Q14978|NOLC1_HUMAN Nucleolar phosphoprotein p130 (Nucleolar 130 kDa protein) (140 kDa
nucleolar phosphoprotein) (Nopp140) (Nucleolar and
coiled-body phosphoprotein 1)
Length = 699
Score = 33.5 bits (75), Expect = 0.82
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 36 TPKKRTPMKKLFAKSPAKAVDSPVILTNIGTFRLSQSDMTSDSDNDVIEKR 188
TPKK P K++ AK+P KA +P R S S S SD + +K+
Sbjct: 238 TPKKTVPKKQVVAKAPVKAATTPT--------RKSSSSEDSSSDEEEEQKK 280
>sp|Q8LE10|A22I_ARATH HVA22-like protein i (AtHVA22i)
Length = 296
Score = 32.0 bits (71), Expect = 2.4
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +3
Query: 21 VAGKETPKKRTPMKK--LFAKSPAKAVDSPVILTNIGTFRLSQSDMTSDSDNDVIEKRRK 194
VA + TP+ + P K+ ++PAK +PV + LS S +S S+N+ E RK
Sbjct: 142 VAAQSTPRPQPPQKRGGRANQAPAKPKKAPVPQSEPEEVSLSSSSSSSSSENEGNEPTRK 201
Query: 195 I 197
+
Sbjct: 202 V 202
>sp|Q6PCX9|TRI37_MOUSE Tripartite motif protein 37
Length = 961
Score = 30.4 bits (67), Expect = 7.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 107 YRAINSFCW*FSKQFLHWCSLFGGFFTGH 21
+ ++ FCW K H C+L+GG GH
Sbjct: 99 HEKLSVFCWTCKKCICHQCALWGGMHGGH 127
>sp|O94972|TRI37_HUMAN Tripartite motif protein 37 (Mulibrey nanism protein)
Length = 964
Score = 30.4 bits (67), Expect = 7.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 107 YRAINSFCW*FSKQFLHWCSLFGGFFTGH 21
+ ++ FCW K H C+L+GG GH
Sbjct: 99 HEKLSVFCWTCKKCICHQCALWGGMHGGH 127
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,653,753
Number of Sequences: 369166
Number of extensions: 1714429
Number of successful extensions: 4049
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4049
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)