Planaria EST Database

DrC_00049

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00049
         (692 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6AXS5|PAIRB_RAT  Plasminogen activator inhibitor 1 RNA-b...    70   4e-12
sp|Q9CY58|PAIRB_MOUSE  Plasminogen activator inhibitor 1 RNA...    70   7e-12
sp|Q8NC51|PAIRB_HUMAN  Plasminogen activator inhibitor 1 RNA...    69   9e-12
sp|Q13061|TRDN_HUMAN  Triadin                                      37   0.038
sp|O42914|YBI8_SCHPO  Protein C16A3.08c in chromosome II           32   1.6  
sp|Q8EW28|CLPB_MYCPE  Chaperone clpB                               32   1.6  
sp|P47335|EFG_MYCGE  Elongation factor G (EF-G)                    31   2.7  
sp|Q92793|CBP_HUMAN  CREB-binding protein                          31   3.5  
sp|Q28092|CYLC2_BOVIN  Cylicin-2 (Cylicin II) (Multiple-band...    30   4.6  
sp|P22859|RBL1B_CHRVI  Ribulose bisphosphate carboxylase lar...    30   6.1  

>sp|Q6AXS5|PAIRB_RAT Plasminogen activator inhibitor 1 RNA-binding protein (PAI1
           RNA-binding protein 1) (PAI-RBP1) (SERPINE1 mRNA-binding
           protein 1) (RDA288)
          Length = 407

 Score = 70.5 bits (171), Expect = 4e-12
 Identities = 54/152 (35%), Positives = 74/152 (48%), Gaps = 30/152 (19%)
 Frame = +2

Query: 44  REFDRHSGSDKT------GIKATEKRDGSGSHNWGNVKD-------IVELEIE-SLETVK 181
           REFDRHSGSD++      G+K  +KR GSGSHNWG VKD        ++ +I  +   ++
Sbjct: 191 REFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLE 250

Query: 182 DENALEKPTESE--AVVDVDKKEPE---------KTMTISEWRAL-NKENAVISSTSAAR 325
             N  E+  E E   V D + KE E         K MT+ EW+A+ NK+ A +      R
Sbjct: 251 QSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFN--IR 308

Query: 326 PANNGED----VFLGMNVYKKRTSHANDSDND 409
             N G D        ++  K   +HA DS  D
Sbjct: 309 KPNEGADGQWKKGFVLHKSKSEEAHAEDSVMD 340

>sp|Q9CY58|PAIRB_MOUSE Plasminogen activator inhibitor 1 RNA-binding protein (PAI1
           RNA-binding protein 1) (PAI-RBP1) (SERPINE1 mRNA-binding
           protein 1)
          Length = 407

 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 54/152 (35%), Positives = 73/152 (48%), Gaps = 30/152 (19%)
 Frame = +2

Query: 44  REFDRHSGSDKT------GIKATEKRDGSGSHNWGNVKD-------IVELEIE-SLETVK 181
           REFDRHSGSD++      G+K  +KR GSGSHNWG VKD        ++ +I  +   + 
Sbjct: 191 REFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLD 250

Query: 182 DENALEKPTESE--AVVDVDKKEPE---------KTMTISEWRAL-NKENAVISSTSAAR 325
             N  E+  E E   V D + KE E         K MT+ EW+A+ NK+ A +      R
Sbjct: 251 QSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFN--IR 308

Query: 326 PANNGED----VFLGMNVYKKRTSHANDSDND 409
             N G D        ++  K   +HA DS  D
Sbjct: 309 KPNEGADGQWKKGFVLHKSKSEEAHAEDSVMD 340

>sp|Q8NC51|PAIRB_HUMAN Plasminogen activator inhibitor 1 RNA-binding protein (PAI1
           RNA-binding protein 1) (PAI-RBP1) (SERPINE1 mRNA-binding
           protein 1)
          Length = 408

 Score = 69.3 bits (168), Expect = 9e-12
 Identities = 54/153 (35%), Positives = 73/153 (47%), Gaps = 31/153 (20%)
 Frame = +2

Query: 44  REFDRHSGSDKT------GIKATEKRDGSGSHNWGNVKD-------IVELEIE-SLETVK 181
           REFDRHSGSD++      G+K  +KR GSGSHNWG VKD        ++ +I  +   + 
Sbjct: 191 REFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNYSDLD 250

Query: 182 DENALEKPTESEA---VVDVDKKEPE---------KTMTISEWRAL-NKENAVISSTSAA 322
             N  E+  E E    V D + KE E         K MT+ EW+A+ NK+ A +      
Sbjct: 251 QSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFN--I 308

Query: 323 RPANNGED----VFLGMNVYKKRTSHANDSDND 409
           R  N G D        ++  K   +HA DS  D
Sbjct: 309 RKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMD 341

>sp|Q13061|TRDN_HUMAN Triadin
          Length = 729

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 7/146 (4%)
 Frame = +2

Query: 137 KDIVELEIESLETVKDENALEKPTESEAVVDVDKKEPEK-------TMTISEWRALNKEN 295
           K   E ++ S    K++  ++K +E E  +DV+KKEP K       T+ I+   A  K+ 
Sbjct: 316 KKKAEKKVTSETKKKEKEDIKKKSEKETAIDVEKKEPGKASETKQGTVKIAAQAAAKKDE 375

Query: 296 AVISSTSAARPANNGEDVFLGMNVYKKRTSHANDSDNDVTVAEDETDSKGRRQIKVNVEX 475
               S    +PA   +         +K    A     + +V  D       +Q+K   E 
Sbjct: 376 KKEDSKKTKKPAEVEQPKGKKQEKKEKHVEPAKSPKKEHSVPSD-------KQVKAKTER 428

Query: 476 XXXXXXXXXXXXXXXXXKEEKKNSTV 553
                            KEEK   TV
Sbjct: 429 AKEEIGAVSSKKAVPGKKEEKTTKTV 454

>sp|O42914|YBI8_SCHPO Protein C16A3.08c in chromosome II
          Length = 284

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 38/137 (27%), Positives = 52/137 (37%), Gaps = 33/137 (24%)
 Frame = +2

Query: 29  RKVHGREFDRHSGSDKTGI-KATEKRDG---------SGSHNWGNVKDIVELEIESLETV 178
           R   GREFDRHS + +    KATE+  G           + N GN     +      E V
Sbjct: 115 RARRGREFDRHSQTGRVDTKKATERGWGDLVNSAANPDVAENEGNTPSGAQTPAAEEENV 174

Query: 179 K--DENALEKPTESEAV----------VDVDKKEPEKTMTISEWRALNKENAV------- 301
           K  DE   E+ + ++ V            V+K  PE+     +  A  K++A        
Sbjct: 175 KTLDEYLSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPKK 234

Query: 302 ----ISSTSAARPANNG 340
               I  T  ARPA  G
Sbjct: 235 VLLDIEQTFTARPARGG 251

>sp|Q8EW28|CLPB_MYCPE Chaperone clpB
          Length = 705

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 15/67 (22%), Positives = 31/67 (46%)
 Frame = +2

Query: 137 KDIVELEIESLETVKDENALEKPTESEAVVDVDKKEPEKTMTISEWRALNKENAVISSTS 316
           K I  LE E +   K+E   +K   +E  ++++K + E+ +   EW+   ++   ++   
Sbjct: 270 KKIFYLETEKIALSKEEGTNQKERINEIEIELEKLKQERDLVEKEWKEQKEQQVALNKIK 329

Query: 317 AARPANN 337
                NN
Sbjct: 330 KEIEKNN 336

>sp|P47335|EFG_MYCGE Elongation factor G (EF-G)
          Length = 688

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +2

Query: 41  GREFDRH--SGSDKTGIKATEKRDGSGSHN-WGNVKDIVELEIESLETVKDENALEKPTE 211
           G  F+R   S   + G+KA   +   G+ N +  + DI+  +    +  K+ENA+EKP  
Sbjct: 141 GANFERSVLSIQQRLGVKAVPIQFPIGAENDFNGIIDIITKKAYFFDGNKEENAIEKPIP 200

Query: 212 SEAVVDVDK 238
            + V  V+K
Sbjct: 201 EQYVDQVEK 209

>sp|Q92793|CBP_HUMAN CREB-binding protein
          Length = 2442

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 18/85 (21%), Positives = 39/85 (45%)
 Frame = +2

Query: 74   KTGIKATEKRDGSGSHNWGNVKDIVELEIESLETVKDENALEKPTESEAVVDVDKKEPEK 253
            KT  +A +     G        +++E +++    VK+E  + +  +    ++VD+K+PE 
Sbjct: 998  KTETQAEDTEPDPGESKGEPRSEMMEEDLQGASQVKEETDIAE--QKSEPMEVDEKKPEV 1055

Query: 254  TMTISEWRALNKENAVISSTSAARP 328
             + + E    +       STS ++P
Sbjct: 1056 KVEVKEEEESSSNGTASQSTSPSQP 1080

>sp|Q28092|CYLC2_BOVIN Cylicin-2 (Cylicin II) (Multiple-band polypeptide II)
          Length = 488

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 5/149 (3%)
 Frame = +2

Query: 41  GREFDRHSGSDKTGIKATEKRDGSGSHNWGNV-----KDIVELEIESLETVKDENALEKP 205
           G+E    S  +K G +   K+D  GS            +  + + +S ++ KD    E  
Sbjct: 171 GKESATESEDEKAGAEKGAKKDRKGSKKGKETPSDSGSEKGDAKKDSKKSKKDSKGKESA 230

Query: 206 TESEAVVDVDKKEPEKTMTISEWRALNKENAVISSTSAARPANNGEDVFLGMNVYKKRTS 385
           TESE      KK+ +K    S+     KE+A   + S     +  +D   G    KK   
Sbjct: 231 TESEGEKGDAKKDDKKGKKGSK---KGKESA---TESEGEKGDAKKDDKKGKKGSKKGKE 284

Query: 386 HANDSDNDVTVAEDETDSKGRRQIKVNVE 472
            A +S+ +   A+ + D KG++  K   E
Sbjct: 285 SATESEGEKGDAKKD-DKKGKKGSKKGKE 312


 Score = 30.4 bits (67), Expect = 4.6
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +2

Query: 41  GREFDRHSGSDKTGIKATEKRDGSGSHNWGNVKDIVELEIESLETVKDENALEKPTESEA 220
           G+E D  +  DK   K  +K+D  GS      +   E E E  ++ KD+   + PT++  
Sbjct: 366 GKESDSKAEGDKGDAKKDDKKDKKGSKK--GKESATESEGEKKDSKKDKAGKKDPTKAGE 423

Query: 221 VVD--VDKKEPEK 253
             D   DKK+ +K
Sbjct: 424 KGDESKDKKDAKK 436

>sp|P22859|RBL1B_CHRVI Ribulose bisphosphate carboxylase large chain 2 (RuBisCO large
           subunit 2)
          Length = 471

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
 Frame = +2

Query: 107 GSGSHNWGNVKDIVELEIESLETVKDENA---LEKPTESEAVVDVDKKEPEKTMTISEWR 277
           G+  H WGN        + +   VK  N    +EK    E + D  +  PE  + +  W+
Sbjct: 398 GTQGHPWGNAAGAAANRVATEACVKARNEGVEIEKHAR-EVLSDAARHSPELAVAMETWK 456

Query: 278 ALNKENAVISSTSAA 322
            +  E  V+    AA
Sbjct: 457 EIKFEFDVVDKLDAA 471

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,479,836
Number of Sequences: 369166
Number of extensions: 1072991
Number of successful extensions: 3288
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3273
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00049

  1. Dr_sW_002_C16
  2. Dr_sW_019_D02