Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_D02
(280 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q13356|PPIL2_HUMAN Peptidyl-prolyl cis-trans isomerase-l... 29 2.9
sp|P23557|XYN4_CALSA Putative endo-1,4-beta-xylanase (Xylan... 28 6.6
sp|Q865W6|IFNG_CAMBA Interferon gamma precursor (IFN-gamma) 28 6.6
sp|Q865X1|IFNG_LAMGL Interferon gamma precursor (IFN-gamma) 28 8.6
sp|Q9TV67|IFNG_TURTR Interferon gamma precursor (IFN-gamma) 28 8.6
>sp|Q13356|PPIL2_HUMAN Peptidyl-prolyl cis-trans isomerase-like 2 (PPIase) (Rotamase)
(Cyclophilin-60) (Cyclophilin-like protein Cyp-60)
Length = 520
Score = 29.3 bits (64), Expect = 2.9
Identities = 21/54 (38%), Positives = 27/54 (50%)
Frame = -1
Query: 175 THFHLGLVKHLPQLNFSSLPY*IYRC*IRLDPYDFYQ*TPH*L*FVGDL*NQFP 14
THF+ G LPQ NF LP+ C + L P+ + TP + F DL N P
Sbjct: 19 THFYGGKKPDLPQTNFRRLPF--DHCSLSLQPFVYPVCTPDGIVF--DLLNIVP 68
>sp|P23557|XYN4_CALSA Putative endo-1,4-beta-xylanase (Xylanase) (1,4-beta-D-xylan
xylanohydrolase) (ORF4)
Length = 312
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 193 FKTMLETHFHLGLVKHLPQLNF 128
FKT LET LGL H+ +LNF
Sbjct: 198 FKTTLETFAKLGLQIHITELNF 219
>sp|Q865W6|IFNG_CAMBA Interferon gamma precursor (IFN-gamma)
Length = 166
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 17 KLILKVADKLKLMWSSLVEIVGVEADLTAVDSIRKRRKIQ 136
KLI D LK+ ++ E++ V DL+ ++RKR++ Q
Sbjct: 117 KLIQIPVDNLKVQRKAISELIKVMNDLSPKSNLRKRKRSQ 156
>sp|Q865X1|IFNG_LAMGL Interferon gamma precursor (IFN-gamma)
Length = 166
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 17 KLILKVADKLKLMWSSLVEIVGVEADLTAVDSIRKRRKIQ 136
KLI D LK+ ++ E++ V DL+ ++RKR++ Q
Sbjct: 117 KLIQIPVDNLKVQRKAISELIKVMNDLSPKSNLRKRKRRQ 156
>sp|Q9TV67|IFNG_TURTR Interferon gamma precursor (IFN-gamma)
Length = 166
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 17 KLILKVADKLKLMWSSLVEIVGVEADLTAVDSIRKRRKIQ 136
KLI D L++ ++ E++ V DL+ ++RKRR+ Q
Sbjct: 117 KLIQIPVDDLQIQRKAISELIRVMKDLSPRSNLRKRRRSQ 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,083,207
Number of Sequences: 369166
Number of extensions: 372641
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 68,354,980
effective HSP length: 62
effective length of database: 56,901,410
effective search space used: 1707042300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)