Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_C16
(692 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6AXS5|PAIRB_RAT Plasminogen activator inhibitor 1 RNA-b... 70 4e-12
sp|Q9CY58|PAIRB_MOUSE Plasminogen activator inhibitor 1 RNA... 70 7e-12
sp|Q8NC51|PAIRB_HUMAN Plasminogen activator inhibitor 1 RNA... 69 9e-12
sp|Q13061|TRDN_HUMAN Triadin 37 0.038
sp|O42914|YBI8_SCHPO Protein C16A3.08c in chromosome II 32 1.6
sp|Q8EW28|CLPB_MYCPE Chaperone clpB 32 1.6
sp|P47335|EFG_MYCGE Elongation factor G (EF-G) 31 2.7
sp|Q92793|CBP_HUMAN CREB-binding protein 31 3.5
sp|Q28092|CYLC2_BOVIN Cylicin-2 (Cylicin II) (Multiple-band... 30 4.6
sp|P22859|RBL1B_CHRVI Ribulose bisphosphate carboxylase lar... 30 6.1
>sp|Q6AXS5|PAIRB_RAT Plasminogen activator inhibitor 1 RNA-binding protein (PAI1
RNA-binding protein 1) (PAI-RBP1) (SERPINE1 mRNA-binding
protein 1) (RDA288)
Length = 407
Score = 70.5 bits (171), Expect = 4e-12
Identities = 54/152 (35%), Positives = 74/152 (48%), Gaps = 30/152 (19%)
Frame = +2
Query: 44 REFDRHSGSDKT------GIKATEKRDGSGSHNWGNVKD-------IVELEIE-SLETVK 181
REFDRHSGSD++ G+K +KR GSGSHNWG VKD ++ +I + ++
Sbjct: 191 REFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLE 250
Query: 182 DENALEKPTESE--AVVDVDKKEPE---------KTMTISEWRAL-NKENAVISSTSAAR 325
N E+ E E V D + KE E K MT+ EW+A+ NK+ A + R
Sbjct: 251 QSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFN--IR 308
Query: 326 PANNGED----VFLGMNVYKKRTSHANDSDND 409
N G D ++ K +HA DS D
Sbjct: 309 KPNEGADGQWKKGFVLHKSKSEEAHAEDSVMD 340
>sp|Q9CY58|PAIRB_MOUSE Plasminogen activator inhibitor 1 RNA-binding protein (PAI1
RNA-binding protein 1) (PAI-RBP1) (SERPINE1 mRNA-binding
protein 1)
Length = 407
Score = 69.7 bits (169), Expect = 7e-12
Identities = 54/152 (35%), Positives = 73/152 (48%), Gaps = 30/152 (19%)
Frame = +2
Query: 44 REFDRHSGSDKT------GIKATEKRDGSGSHNWGNVKD-------IVELEIE-SLETVK 181
REFDRHSGSD++ G+K +KR GSGSHNWG VKD ++ +I + +
Sbjct: 191 REFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNCSDLD 250
Query: 182 DENALEKPTESE--AVVDVDKKEPE---------KTMTISEWRAL-NKENAVISSTSAAR 325
N E+ E E V D + KE E K MT+ EW+A+ NK+ A + R
Sbjct: 251 QSNVTEETPEGEEHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFN--IR 308
Query: 326 PANNGED----VFLGMNVYKKRTSHANDSDND 409
N G D ++ K +HA DS D
Sbjct: 309 KPNEGADGQWKKGFVLHKSKSEEAHAEDSVMD 340
>sp|Q8NC51|PAIRB_HUMAN Plasminogen activator inhibitor 1 RNA-binding protein (PAI1
RNA-binding protein 1) (PAI-RBP1) (SERPINE1 mRNA-binding
protein 1)
Length = 408
Score = 69.3 bits (168), Expect = 9e-12
Identities = 54/153 (35%), Positives = 73/153 (47%), Gaps = 31/153 (20%)
Frame = +2
Query: 44 REFDRHSGSDKT------GIKATEKRDGSGSHNWGNVKD-------IVELEIE-SLETVK 181
REFDRHSGSD++ G+K +KR GSGSHNWG VKD ++ +I + +
Sbjct: 191 REFDRHSGSDRSSFSHYSGLKHEDKRGGSGSHNWGTVKDELTESPKYIQKQISYNYSDLD 250
Query: 182 DENALEKPTESEA---VVDVDKKEPE---------KTMTISEWRAL-NKENAVISSTSAA 322
N E+ E E V D + KE E K MT+ EW+A+ NK+ A +
Sbjct: 251 QSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDRAKVEFN--I 308
Query: 323 RPANNGED----VFLGMNVYKKRTSHANDSDND 409
R N G D ++ K +HA DS D
Sbjct: 309 RKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMD 341
>sp|Q13061|TRDN_HUMAN Triadin
Length = 729
Score = 37.4 bits (85), Expect = 0.038
Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 7/146 (4%)
Frame = +2
Query: 137 KDIVELEIESLETVKDENALEKPTESEAVVDVDKKEPEK-------TMTISEWRALNKEN 295
K E ++ S K++ ++K +E E +DV+KKEP K T+ I+ A K+
Sbjct: 316 KKKAEKKVTSETKKKEKEDIKKKSEKETAIDVEKKEPGKASETKQGTVKIAAQAAAKKDE 375
Query: 296 AVISSTSAARPANNGEDVFLGMNVYKKRTSHANDSDNDVTVAEDETDSKGRRQIKVNVEX 475
S +PA + +K A + +V D +Q+K E
Sbjct: 376 KKEDSKKTKKPAEVEQPKGKKQEKKEKHVEPAKSPKKEHSVPSD-------KQVKAKTER 428
Query: 476 XXXXXXXXXXXXXXXXXKEEKKNSTV 553
KEEK TV
Sbjct: 429 AKEEIGAVSSKKAVPGKKEEKTTKTV 454
>sp|O42914|YBI8_SCHPO Protein C16A3.08c in chromosome II
Length = 284
Score = 32.0 bits (71), Expect = 1.6
Identities = 38/137 (27%), Positives = 52/137 (37%), Gaps = 33/137 (24%)
Frame = +2
Query: 29 RKVHGREFDRHSGSDKTGI-KATEKRDG---------SGSHNWGNVKDIVELEIESLETV 178
R GREFDRHS + + KATE+ G + N GN + E V
Sbjct: 115 RARRGREFDRHSQTGRVDTKKATERGWGDLVNSAANPDVAENEGNTPSGAQTPAAEEENV 174
Query: 179 K--DENALEKPTESEAV----------VDVDKKEPEKTMTISEWRALNKENAV------- 301
K DE E+ + ++ V V+K PE+ + A K++A
Sbjct: 175 KTLDEYLSERKSAAKPVGRTVEKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPKK 234
Query: 302 ----ISSTSAARPANNG 340
I T ARPA G
Sbjct: 235 VLLDIEQTFTARPARGG 251
>sp|Q8EW28|CLPB_MYCPE Chaperone clpB
Length = 705
Score = 32.0 bits (71), Expect = 1.6
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = +2
Query: 137 KDIVELEIESLETVKDENALEKPTESEAVVDVDKKEPEKTMTISEWRALNKENAVISSTS 316
K I LE E + K+E +K +E ++++K + E+ + EW+ ++ ++
Sbjct: 270 KKIFYLETEKIALSKEEGTNQKERINEIEIELEKLKQERDLVEKEWKEQKEQQVALNKIK 329
Query: 317 AARPANN 337
NN
Sbjct: 330 KEIEKNN 336
>sp|P47335|EFG_MYCGE Elongation factor G (EF-G)
Length = 688
Score = 31.2 bits (69), Expect = 2.7
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 41 GREFDRH--SGSDKTGIKATEKRDGSGSHN-WGNVKDIVELEIESLETVKDENALEKPTE 211
G F+R S + G+KA + G+ N + + DI+ + + K+ENA+EKP
Sbjct: 141 GANFERSVLSIQQRLGVKAVPIQFPIGAENDFNGIIDIITKKAYFFDGNKEENAIEKPIP 200
Query: 212 SEAVVDVDK 238
+ V V+K
Sbjct: 201 EQYVDQVEK 209
>sp|Q92793|CBP_HUMAN CREB-binding protein
Length = 2442
Score = 30.8 bits (68), Expect = 3.5
Identities = 18/85 (21%), Positives = 39/85 (45%)
Frame = +2
Query: 74 KTGIKATEKRDGSGSHNWGNVKDIVELEIESLETVKDENALEKPTESEAVVDVDKKEPEK 253
KT +A + G +++E +++ VK+E + + + ++VD+K+PE
Sbjct: 998 KTETQAEDTEPDPGESKGEPRSEMMEEDLQGASQVKEETDIAE--QKSEPMEVDEKKPEV 1055
Query: 254 TMTISEWRALNKENAVISSTSAARP 328
+ + E + STS ++P
Sbjct: 1056 KVEVKEEEESSSNGTASQSTSPSQP 1080
>sp|Q28092|CYLC2_BOVIN Cylicin-2 (Cylicin II) (Multiple-band polypeptide II)
Length = 488
Score = 30.4 bits (67), Expect = 4.6
Identities = 37/149 (24%), Positives = 61/149 (40%), Gaps = 5/149 (3%)
Frame = +2
Query: 41 GREFDRHSGSDKTGIKATEKRDGSGSHNWGNV-----KDIVELEIESLETVKDENALEKP 205
G+E S +K G + K+D GS + + + +S ++ KD E
Sbjct: 171 GKESATESEDEKAGAEKGAKKDRKGSKKGKETPSDSGSEKGDAKKDSKKSKKDSKGKESA 230
Query: 206 TESEAVVDVDKKEPEKTMTISEWRALNKENAVISSTSAARPANNGEDVFLGMNVYKKRTS 385
TESE KK+ +K S+ KE+A + S + +D G KK
Sbjct: 231 TESEGEKGDAKKDDKKGKKGSK---KGKESA---TESEGEKGDAKKDDKKGKKGSKKGKE 284
Query: 386 HANDSDNDVTVAEDETDSKGRRQIKVNVE 472
A +S+ + A+ + D KG++ K E
Sbjct: 285 SATESEGEKGDAKKD-DKKGKKGSKKGKE 312
Score = 30.4 bits (67), Expect = 4.6
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +2
Query: 41 GREFDRHSGSDKTGIKATEKRDGSGSHNWGNVKDIVELEIESLETVKDENALEKPTESEA 220
G+E D + DK K +K+D GS + E E E ++ KD+ + PT++
Sbjct: 366 GKESDSKAEGDKGDAKKDDKKDKKGSKK--GKESATESEGEKKDSKKDKAGKKDPTKAGE 423
Query: 221 VVD--VDKKEPEK 253
D DKK+ +K
Sbjct: 424 KGDESKDKKDAKK 436
>sp|P22859|RBL1B_CHRVI Ribulose bisphosphate carboxylase large chain 2 (RuBisCO large
subunit 2)
Length = 471
Score = 30.0 bits (66), Expect = 6.1
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Frame = +2
Query: 107 GSGSHNWGNVKDIVELEIESLETVKDENA---LEKPTESEAVVDVDKKEPEKTMTISEWR 277
G+ H WGN + + VK N +EK E + D + PE + + W+
Sbjct: 398 GTQGHPWGNAAGAAANRVATEACVKARNEGVEIEKHAR-EVLSDAARHSPELAVAMETWK 456
Query: 278 ALNKENAVISSTSAA 322
+ E V+ AA
Sbjct: 457 EIKFEFDVVDKLDAA 471
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,479,836
Number of Sequences: 369166
Number of extensions: 1072991
Number of successful extensions: 3288
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3273
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)