Planarian EST Database

DrC_00041

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00041 ATATGAGTGACAGTAAAAAACTCTTACAAAATACAGAAATAAAGGACGAGAATAAGGAAA ATGGTATGAAAAATCATCAAGATGAAGAGTTAATAAATTGTTTGACTGCTATAGCAGGTA ATGATTTATCAGTCAACGAAACAGAAGAATATATGACATCAGATGAATTTATCTTTGAAA ATATTGATAAAGATAGTGAAGAAGAACAAGATGCTTCATCAGATGATCAATCTCCTCGAA AAAGAAGAAAACGGAAAATCGAGAAACGAAAATGTTCTAATTATGATATTTTTAATGAAA AAACAGATATTAGCAAATGTGTGAAATTAATTGAAAAATTAATAATTGACATAAAACAAA AATCAAGTGAAATCAAATGGAAAAATGCTGAAAGAAAATTTGAAAAGTGGAATAATTACT CGAAAAAACATTTGAAAGATCACTTTTTTTGTGATAAATTATTTAGAGCCGTTTATTTGT TAAATTTGTATTGGAGAAGAATGGAAAGTTTTTATCATCTTCTGGAGAAATTTGGAAAAA ATAAACAACATATTGCAAAGCTCAGAAATTGCAAATCAATTTTTAGTTTCGGTTGTGGAG CAGCACCAGAAATTGCAGCATTCCTTCATTTTTATAAAGTGAAATTAGGATACCGAAATT ATAACAATTTATCAACAATAAAAGGAGTTGATACAATAAAAGACTGGGAATGTTACATTT CTGTTATTGAAGACGTTTTCAAAATTAACTTCTTATTCAAAAATGAAGATATCAATGAAA ACTTTATGTTAAATTTTGAAAATGTTGATTTATTAATGATGTCTTATTCCTATGAATCAA AATATGGAAATATATGGAATGATCTGAAAAATAAATGCA

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00041
         (879 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P24757|RPO4_VACCV  DNA-directed RNA polymerase 35 kDa pol...    33   1.0  
sp|P33812|RPO4_VARV  DNA-directed RNA polymerase 35 kDa poly...    33   1.4  
sp|Q5GRT1|ATPG_WOLTR  ATP synthase gamma chain (ATP synthase...    33   1.4  
sp|O57233|RPO4_VACCA  DNA-directed RNA polymerase 35 kDa pol...    32   1.8  
sp|Q8TLC0|YV17_METAC  Hypothetical UPF0228 protein MA3117          32   1.8  
sp|P06548|BLA3_BACCE  Beta-lactamase III precursor                 32   2.3  
sp|Q6RZF4|RPO4_RABPU  DNA-directed RNA polymerase 35 kDa pol...    32   3.0  
sp|Q77TH6|RPO4_VACCT  DNA-directed RNA polymerase 35 kDa pol...    32   3.0  
sp|Q9Y4L1|OXRP_HUMAN  150 kDa oxygen-regulated protein precu...    32   3.0  
sp|Q42434|BIP_SPIOL  Luminal binding protein precursor (BiP)...    31   4.0

>sp|P24757|RPO4_VACCV DNA-directed RNA polymerase 35 kDa polypeptide
          Length = 305

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 21/171 (12%)
 Frame = +3

Query: 390 ERKFEKWNNYSKKHLKDHFFCDKLFRAVYLLNLYWRRMESFYHLLEKFGKNKQHIAKLRN 569
           +R   + +NY   +  D++  DK   +V +++      E+  H+ +++        +L  
Sbjct: 84  KRSQSERDNYITLYDFDYYIIDKDTNSVTMVDKPTELKETLLHVFQEYRLKSSQTIEL-- 141

Query: 570 CKSIFSFGCGAAPEIAAFLHFYKVKLGYRNYNNLSTIKGVD------------------- 692
               FS G     +I + L F  V++  R YNN+ TI   D                   
Sbjct: 142 --IAFSSGTVINEDIVSKLTFLDVEVFNREYNNVKTIIDPDFVFRSPFIVISPMGKLTFF 199

Query: 693 -TIKDWECYISVIEDVFKINFLFKNEDIN-ENFMLNFENVDLLMMSYSYES 839
             +  W  + S ++D+  I+FL      N  N M+   N D  + SY+ ES
Sbjct: 200 VEVYSWFDFKSCLKDI--IDFLEGALIANIHNHMIKVGNCDETVSSYNPES 248

>sp|P33812|RPO4_VARV DNA-directed RNA polymerase 35 kDa polypeptide
          Length = 305

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 24/103 (23%), Positives = 46/103 (44%)
 Frame = +3

Query: 390 ERKFEKWNNYSKKHLKDHFFCDKLFRAVYLLNLYWRRMESFYHLLEKFGKNKQHIAKLRN 569
           +R   + +NY   +  D++  DK   +V +++      E+  H+ +++        +L  
Sbjct: 84  KRSQSERDNYITLYDFDYYIIDKDTNSVTMVDKPTELKETLLHVFQEYRLKSSQTIEL-- 141

Query: 570 CKSIFSFGCGAAPEIAAFLHFYKVKLGYRNYNNLSTIKGVDTI 698
               FS G     +I + L F  V++  R YNN+ TI   D +
Sbjct: 142 --IAFSSGTVINEDIVSKLTFLDVEVFNREYNNVKTIMNPDFV 182

>sp|Q5GRT1|ATPG_WOLTR ATP synthase gamma chain (ATP synthase F1 sector gamma subunit)
          Length = 290

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
 Frame = +3

Query: 534 GKNK---QHIAKLRNCKSIFSFGCGAAPEIAAFLHFYKVKLGYRNYNNLSTIKGV-DTIK 701
           GKN+   + I K+ N K I      A  +      + ++K+ Y  + N  T K + +TIK
Sbjct: 127 GKNRFDSKSILKIENSKGITLKRVEALVDSMDLSKYDRIKVFYNKFYNTFTQKPMLETIK 186

Query: 702 DWECYISVIEDVF---KINFLFKNEDINENFML 791
            W    S+I+D      I++ +K E  N  F+L
Sbjct: 187 PWSKSSSLIDDYLTNSTIDYNYKYEPQNTEFIL 219

>sp|O57233|RPO4_VACCA DNA-directed RNA polymerase 35 kDa polypeptide
          Length = 305

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 21/171 (12%)
 Frame = +3

Query: 390 ERKFEKWNNYSKKHLKDHFFCDKLFRAVYLLNLYWRRMESFYHLLEKFGKNKQHIAKLRN 569
           +R   + +NY   +  D++  DK   +V +++      E+  H+ +++        +L  
Sbjct: 84  KRSQSERDNYITLYDFDYYIIDKDTNSVTMVDKPTELKETLLHVFQEYRLKSSQTIEL-- 141

Query: 570 CKSIFSFGCGAAPEIAAFLHFYKVKLGYRNYNNLSTIKGVD------------------- 692
               FS G     +I + L F  V++  R YNN+ TI   D                   
Sbjct: 142 --IAFSSGTVINEDIVSKLTFLDVEVFNREYNNVKTIIDPDFVFRSPFIVISPMGKLTFF 199

Query: 693 -TIKDWECYISVIEDVFKINFLFKNEDIN-ENFMLNFENVDLLMMSYSYES 839
             +  W  + S  +D+  I+FL      N  N M+   N D  + SY+ ES
Sbjct: 200 VEVYSWFDFKSCFKDI--IDFLEGALIANIHNHMIKVGNCDETVSSYNPES 248

>sp|Q8TLC0|YV17_METAC Hypothetical UPF0228 protein MA3117
          Length = 181

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 23/76 (30%), Positives = 37/76 (48%)
 Frame = +3

Query: 606 PEIAAFLHFYKVKLGYRNYNNLSTIKGVDTIKDWECYISVIEDVFKINFLFKNEDINENF 785
           PE+ A L  Y + + Y    N +  +GV        Y+ V ED  KIN L KNE++    
Sbjct: 46  PEVTAILENYDIPVNYTIDYNSNIGRGV-------YYVKVDED--KINELRKNENLISEI 96

Query: 786 MLNFENVDLLMMSYSY 833
            L   N +++++S  +
Sbjct: 97  ELKKGNYNIIILSEEF 112

>sp|P06548|BLA3_BACCE Beta-lactamase III precursor
          Length = 316

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +3

Query: 12  SKKLLQNTEIKDENKENGMKNHQDEELINCLTAIAGNDLSVNETEEYMTSDEFIFENIDK 191
           +K+  Q  ++K ENK N      ++E  N    I   D S N+T  Y   D F F +  K
Sbjct: 40  NKQTNQTNQVKQENKRNHAFAKLEKEY-NAKLGIYALDTSTNQTVAYHADDRFAFASTSK 98

>sp|Q6RZF4|RPO4_RABPU DNA-directed RNA polymerase 35 kDa polypeptide
          Length = 305

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 24/103 (23%), Positives = 46/103 (44%)
 Frame = +3

Query: 390 ERKFEKWNNYSKKHLKDHFFCDKLFRAVYLLNLYWRRMESFYHLLEKFGKNKQHIAKLRN 569
           +R   + +NY   +  D++  DK   +V +++      E+  H+ +++        +L  
Sbjct: 84  KRSQSERDNYITLYDFDYYIIDKDTNSVTMVDKPTELKETLLHVFQEYRLKSSQTIEL-- 141

Query: 570 CKSIFSFGCGAAPEIAAFLHFYKVKLGYRNYNNLSTIKGVDTI 698
               FS G     +I + L F  V++  R YNN+ TI   D +
Sbjct: 142 --IAFSSGTVINEDIVSKLTFLDVEVFNREYNNVKTIIDPDFV 182

>sp|Q77TH6|RPO4_VACCT DNA-directed RNA polymerase 35 kDa polypeptide
 sp|P21087|RPO4_VACCC DNA-directed RNA polymerase 35 kDa polypeptide
          Length = 305

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 24/103 (23%), Positives = 46/103 (44%)
 Frame = +3

Query: 390 ERKFEKWNNYSKKHLKDHFFCDKLFRAVYLLNLYWRRMESFYHLLEKFGKNKQHIAKLRN 569
           +R   + +NY   +  D++  DK   +V +++      E+  H+ +++        +L  
Sbjct: 84  KRSQSERDNYITLYDFDYYIIDKDTNSVTMVDKPTELKETLLHVFQEYRLKSSQTIEL-- 141

Query: 570 CKSIFSFGCGAAPEIAAFLHFYKVKLGYRNYNNLSTIKGVDTI 698
               FS G     +I + L F  V++  R YNN+ TI   D +
Sbjct: 142 --IAFSSGTVINEDIVSKLTFLDVEVFNREYNNVKTIIDPDFV 182

>sp|Q9Y4L1|OXRP_HUMAN 150 kDa oxygen-regulated protein precursor (Orp150) (Hypoxia
           up-regulated 1)
          Length = 999

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = +3

Query: 333 EKLIIDIKQKSSEIKWKNAERKFEKWNNYSKKHLKDHFFCDKLFRAVYLLNLYWRRMES- 509
           E L +   Q  + +K K     F+K+ +Y  K +K HF  D+    V  L+    R+ES 
Sbjct: 506 EDLRVFGSQNLTTVKLKGVGDSFKKYPDYESKGIKAHFNLDE--SGVLSLD----RVESV 559

Query: 510 FYHLLEKFGKNKQHIAKLRNCKSIFSFGCGAAPE 611
           F  L+E   + +  + KL N  S   FG G  P+
Sbjct: 560 FETLVEDSAEEESTLTKLGNTISSL-FGGGTTPD 592

>sp|Q42434|BIP_SPIOL Luminal binding protein precursor (BiP) (78 kDa glucose-regulated
           protein homolog) (GRP 78)
          Length = 668

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +3

Query: 288 IFNEKTDISKCVKLIEKLIIDIKQK-----SSEIKWKNAERKFEKWNNYSKKHLKDHFFC 452
           I+N K  IS   KL +KL  D K+K        ++W +  +  EK  +Y +K  +    C
Sbjct: 578 IYNMKNQISDADKLADKLESDEKEKIEGAVKEALEWLDDNQSAEK-EDYDEKLKEVEAVC 636

Query: 453 DKLFRAVY 476
           + +  AVY
Sbjct: 637 NPIITAVY 644

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,307,107
Number of Sequences: 369166
Number of extensions: 1434753
Number of successful extensions: 4978
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4976
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00041

Planaria EST Database

DrC_00041

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail