Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_D23
(211 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06548|BLA3_BACCE Beta-lactamase III precursor 29 3.8
sp|Q6YCH2|TDPZ4_MOUSE TD and POZ domain containing protein 4 28 5.0
sp|Q9NPG8|ZDHC4_HUMAN Probable palmitoyltransferase ZDHHC4 ... 28 6.5
>sp|P06548|BLA3_BACCE Beta-lactamase III precursor
Length = 316
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 9 EIKDENKENGMKNHQDEELINCLTAIAGNDLSVNETEEYMTSDEFIFENIDK 164
++K ENK N ++E N I D S N+T Y D F F + K
Sbjct: 48 QVKQENKRNHAFAKLEKEY-NAKLGIYALDTSTNQTVAYHADDRFAFASTSK 98
>sp|Q6YCH2|TDPZ4_MOUSE TD and POZ domain containing protein 4
Length = 370
Score = 28.5 bits (62), Expect = 5.0
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +3
Query: 21 ENKENGMKNHQDEELINCLTAIAGNDLSVNETEEYMTSDEFIFENIDK 164
E K G +++L T I+ V ETEEY+TS F E+ DK
Sbjct: 6 EAKSRGHTQSHEQKLCYSWT-ISNFSFFVEETEEYITSPVFSLEDNDK 52
>sp|Q9NPG8|ZDHC4_HUMAN Probable palmitoyltransferase ZDHHC4 (Zinc finger DHHC
domain-containing protein 4) (DHHC-4) (Zinc finger
protein 374)
Length = 344
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -2
Query: 198 HLMKHLVLLHYLYQYFQR*IHLMSYILLFR*LINHYLL 85
H+M + L+ YL+ F R + ++ ++++ L+ YLL
Sbjct: 238 HVMDTVFLIQYLFLTFPRIVFMLGFVVVLSFLLGGYLL 275
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,546,261
Number of Sequences: 369166
Number of extensions: 213154
Number of successful extensions: 699
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 68,354,980
effective HSP length: 41
effective length of database: 60,780,845
effective search space used: 1701863660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)